PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018444.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARR-B
Protein Properties Length: 677aa    MW: 74157.2 Da    PI: 5.5098
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018444.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.43.4e-28233286155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av++L G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Aco018444.1 233 KPRVVWSVELHQQFVHAVNHL-GFDKAVPKKILELMNVPGLTRENVASHLQKFRL 286
                  79*******************.********************************8 PP
2Response_reg73.11.1e-24491571109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+++ + +l+q l +  y +v++++++++al ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a    +++ + +k Ga 
   Aco018444.1  49 VLVVDDDDTCLTILKQKLLRCCY-DVTTCSEATKALSLLRESKggFDVVISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADTRTSLVMKGIKHGAC 143
                   89*********************.******************99********************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Aco018444.1 144 DYLIKPVRIEELKN 157
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-3446170IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.2E-4046186No hitNo description
SMARTSM004483.6E-2647159IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.66148163IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2149157IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.81E-2450163No hitNo description
PROSITE profilePS5129411.547230289IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-29230291IPR009057Homeodomain-like
SuperFamilySSF466896.45E-20231290IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24233286IPR006447Myb domain, plants
PfamPF002497.3E-8235284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MIGFDFGVFE GCFGGWGIFW AALSGVFGKG VAMAEEWAEW DRFPVGLKVL VVDDDDTCLT  60
ILKQKLLRCC YDVTTCSEAT KALSLLRESK GGFDVVISDV HMPDMDGFRL LELVGLEMDL  120
PVIMMSADTR TSLVMKGIKH GACDYLIKPV RIEELKNIWQ HVFRKKQKEY EPSGGSLEDS  180
NRNNNKKACD DADYASLGKE GADGSSKSQK KRRDVKEEDD GELENSDPSS SKKPRVVWSV  240
ELHQQFVHAV NHLGFDKAVP KKILELMNVP GLTRENVASH LQKFRLYLKK MSEVSQQQTP  300
HHNSFSGLPS NVRANTLNQL DLQSWTVSSQ ITPQTLAAFQ NELLGQPSNN LILSGTDQPS  360
LRQVSVQAPN LESERVFSWP ILKSQPNLSR QLSQASAIPV EGISSAFPSW SCDDLSGQIT  420
NSRNSTTMSQ ILQQQQQGFD SFDLGKNSML INQNPVLPTS STNQDPNFSL SQSSASINAA  480
SSCGLLDQKF IIANTNVETR CDPFQMSQHS MKVTSQASSD LLSQNSSYNN SSIGIMDYSL  540
LMPQSKSVRF GVGQVVANSY SVPELDSSHV SSCIDDAIWG QLRNLDWNIN NLTSGSPSLV  600
PNSCNIQNSS GLLSNLPNPR QGRSSLGFVG KGTCIPSRFA INDVESPTNN LSHSNTCTDD  660
GGDMPNAVRF GLNGQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-24229292164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6610310.0KM661031.1 Ananas bracteatus clone 41159b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105708.10.0two-component response regulator ORR21-like isoform X1
SwissprotA2XE311e-168ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A199VWM60.0A0A199VWM6_ANACO; Two-component response regulator
STRINGXP_010271366.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-104response regulator 2