PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018555.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 695aa    MW: 77264.5 Da    PI: 4.4881
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018555.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.31.3e-3513528313128
          NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpk...................................kvkaeekewyfFskrdkkyatgkrkn 75 
                  e+v++  k +v g++l+l  vi +vd+yk++P++Lp                                     +k+++k+wyfFs+rd+ky++g+r+n
  Aco018555.1 135 EVVHQDFKIEVCGRRLKL-PVIGDVDVYKCDPSELPVyrqaaciakanqllelqylfpleggnsskmsmeksLLKSGDKQWYFFSPRDRKYPNGSRSN 231
                  666666777788888888.78***************5589***********************9999877765666999******************* PP

          NAM  76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  r tk+gyWkatgkd+++++ +++++g kktLv+y+grapkge+tdWvmhey+l
  Aco018555.1 232 RGTKHGYWKATGKDRSICQ-NSKAIGNKKTLVYYHGRAPKGERTDWVMHEYTL 283
                  ******************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.205123306IPR003441NAC domain
PfamPF023657.5E-15205283IPR003441NAC domain
SuperFamilySSF1019411.44E-36208306IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MLINPNQNLA LPSSFDEMAL KMLHVVEIMC SMKIRLLAGN EMVSVMNGMV VGRLIADNLM  60
NDEQFPTSID VSGNTATWGR LGYCIDREGV VVVEGMVVDG DNDDDEDTLG FECHDRRMPN  120
LEPKRAKRIS NSAFEVVHQD FKIEVCGRRL KLPVIGDVDV YKCDPSELPV YRQAACIAKA  180
NQLLELQYLF PLEGGNSSKM SMEKSLLKSG DKQWYFFSPR DRKYPNGSRS NRGTKHGYWK  240
ATGKDRSICQ NSKAIGNKKT LVYYHGRAPK GERTDWVMHE YTLEEQALVN CNNVQDYFAL  300
YKVFRKSGPG PKNGEQYGAP FREEEWSDDA DDETFLNQNN IERELPEPVA SVTTSSTVID  360
APNTLPIGDL EDFLLQLSNE HGIDQRHSEF SAYISEIDVE KNSGSHVLIP SSVPLNPFTQ  420
ESTLRNLTDV GNNCQIAQSD LAYVQPTDNP EVASFSACPE QGQMKADEEF LEIKDFSDLD  480
SVLRSMDEDI YNDCIRDTEG LYDTYFDAPM CLAELGPIGG AVQNPYTGCF TEDETQDHRH  540
LTAELWMHEQ GFNIASASES NKVLMEMPES GIVHAGTNQE ETVQEQLAAS ESWFNSALSA  600
FLDSVPSSPA IASENAFISR ALERVSSFRT QQVGGRDSDA AIDREAVLHG RRRGNNGGFL  660
FVSFLVGLGA VLWLLTIGAA VKVFKGLWGR VISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-3313528327140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090635.10.0NAC domain-containing protein 17-like
TrEMBLA0A199V9T50.0A0A199V9T5_ANACO; NAC domain-containing protein 17
STRINGXP_008796459.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1851269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-79NAC domain containing protein 17