PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018631.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 281aa    MW: 29893.9 Da    PI: 5.3813
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018631.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-0696118426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+ +++ G C +G  C FaHg
  Aco018631.1  96 AVCPEYRQRGDCCRGQACEFAHG 118
                  68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.02792119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-592122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.33392120IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-496118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-596121IPR000571Zinc finger, CCCH-type
SMARTSM0035666128151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFDGYSDDFA DYQRPTITLP SYYQLAFLPT AAGSASAADD MRERPKKEQS DEFLMYTYKV  60
KSCSKKKSHD WTACPYAHRG EKARRRDPRK FPYSAAVCPE YRQRGDCCRG QACEFAHGVF  120
EFWLHPARFR TKMCDAGPAC SRKICFFAHA PEQLRPAAVQ YCLRCGGSVC LGSSTEGGDS  180
SSEAAAAGAC TGACLGNSYS EEMESSEAAA YCASAGTAGS SSSSSSSSSS ISSSSPPPPP  240
ASSAAKGDGI NGFASADGGD GEEEDYAGFP HLDWILDIVN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKKSH
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113248.11e-143zinc finger CCCH domain-containing protein 54-like
SwissprotO650363e-50C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A199VZW91e-130A0A199VZW9_ANACO; Zinc finger CCCH domain-containing protein 54
STRINGXP_010275497.12e-51(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.16e-51C3H family protein