PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018659.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 335aa    MW: 37574.1 Da    PI: 6.6792
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018659.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.85.7e-161663149
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                 lppGfrFhPtdee++++yL +kv + ++ + +++ evd++k+ePwdLp+
  Aco018659.1 16 LPPGFRFHPTDEEIITHYLSPKVVNPSFGA-RAMGEVDLNKCEPWDLPR 63
                 79*************************999.88**************93 PP
2NAM76.94.6e-246412472129
          NAM  72 krknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   r+nrat +gyWkatgkdke+++    + +lvg+kktLvfykgrap+gekt+Wvmheyrle
  Aco018659.1  64 MRANRATGAGYWKATGKDKEIHRGkgaTAALVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 124
                  589*******************984444445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-4811150IPR003441NAC domain
PROSITE profilePS5100534.39616150IPR003441NAC domain
PfamPF023656.5E-2417123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEDAAVVNMR EECMDLPPGF RFHPTDEEII THYLSPKVVN PSFGARAMGE VDLNKCEPWD  60
LPRMRANRAT GAGYWKATGK DKEIHRGKGA TAALVGMKKT LVFYKGRAPR GEKTNWVMHE  120
YRLEGPLFYY SNLPKSSKVD EWVVCKVFHK SVGIKRSPVH GLESTNSLGD DHLLDSTMVS  180
PLRDSFNYNP TSSYIDNKSF EFKAIPTSSS LTPSYFNTAT AMENTPHGIN YQANYGSPTY  240
SPSSLIYPPI HRSGSFFSFP GLIDMSHLHH EEATERQWKA EQHANQPMVS TSRDTGLSTD  300
HNTEISSVIS KHYDDLDAPS SSEPVIDIDN IWKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-371415118169NAC domain-containing protein 19
3swm_B3e-371415118169NAC domain-containing protein 19
3swm_C3e-371415118169NAC domain-containing protein 19
3swm_D3e-371415118169NAC domain-containing protein 19
3swp_A3e-371415118169NAC domain-containing protein 19
3swp_B3e-371415118169NAC domain-containing protein 19
3swp_C3e-371415118169NAC domain-containing protein 19
3swp_D3e-371415118169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103239.10.0NAC domain-containing protein 100-like
TrEMBLA0A199W4K80.0A0A199W4K8_ANACO; NAC domain-containing protein 100
STRINGXP_008782760.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.18e-81NAC domain containing protein 100