PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco018680.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 201aa MW: 20949.9 Da PI: 8.708

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco018680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.4	2.8e-39	23	122	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rr+C+++C++ pyf ++p+kfa vhk+FGasn +k+l+ +pe++r da+++lvyeA++r++dPvyG++gvil+lqqq++ l+ael ++k Aco018680.1 23 PCAACKFMRRRCTQQCPFFPYFSPHEPQKFASVHKVFGASNASKILSVVPESQRADAANTLVYEANMRLQDPVYGCTGVILALQQQVQALEAELGAVK 120 7*********************************************************************************************9988 PP DUF260 99 ee 100 +e Aco018680.1 121 AE 122 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.434	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-39	23	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAQRPPLGPA GGMLSTALNT VTPCAACKFM RRRCTQQCPF FPYFSPHEPQ KFASVHKVFG 60 ASNASKILSV VPESQRADAA NTLVYEANMR LQDPVYGCTG VILALQQQVQ ALEAELGAVK 120 AEVLKYKYRP TAVATATILP PSTSHAAAFL ATAAGLSVTA PPPLATATPA PASSSSSMYT 180 AASSSTDYSS VTNENAPYFG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-41	23	126	11	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-41	23	126	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020103786.1	1e-144	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-59	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A199UPS9	1e-113	A0A199UPS9_ANACO; LOB domain-containing protein 15 (Fragment)
STRING	GSMUA_Achr5P07460_001	2e-91	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-54	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Aco018680.1

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]