PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019059.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LFY
Protein Properties Length: 167aa    MW: 17965 Da    PI: 8.1407
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019059.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY113.33.5e-3566166184283
      FLO_LFY 184 ekkkaskkkqkrkkkkelkse.ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk 280
                  + ++ s +k+krk++ + + + +  +eeeee e+ee +g+++        f+vtepgevar+kknGLDYLf+LyeqCr fLlqvq++ake+G+kcPtk
  Aco019059.1  66 QCTEGSCSKTKRKRSPQGNYAeHGLEEEEEEMEEEEVKGRREWRAWWCGAFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSLAKEHGHKCPTK 163
                  22222233444444444333313333333333333334443333445679************************************************ PP

      FLO_LFY 281 vtn 283
                   +n
  Aco019059.1 164 HAN 166
                  876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.5E-3235166IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAGLSRGAGA AAAASSRVSS SSRAVEGAAG ASADHTAEAL VGRGQEEGRP GRAAPRAAAC  60
VRLRGQCTEG SCSKTKRKRS PQGNYAEHGL EEEEEEMEEE EVKGRREWRA WWCGAFVVTE  120
PGEVARAKKN GLDYLFHLYE QCRLFLLQVQ SLAKEHGHKC PTKHAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A5e-231161661161PROTEIN LEAFY
2vy2_A5e-231161661161PROTEIN LEAFY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6186644e-44AB618664.1 Alstroemeria ligtu subsp. ligtu AlsLFY mRNA for floricaula/leafy protein, complete cds.
GenBankAB6186654e-44AB618665.1 Alstroemeria ligtu subsp. ligtu AlsLFY gene for floricaula/leafy protein, complete cds, allele: Lg1.
GenBankAB6186664e-44AB618666.1 Alstroemeria ligtu subsp. ligtu AlsLFY gene for floricaula/leafy protein, complete cds, allele: Lg2.
GenBankAB6186674e-44AB618667.1 Alstroemeria hybrid cultivar AlsLFY gene for floricaula/leafy protein, complete cds, allele: Gg1.
GenBankAB6186684e-44AB618668.1 Alstroemeria hybrid cultivar AlsLFY gene for floricaula/leafy protein, complete cds, allele: Gg2.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82693649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-23floral meristem identity control protein LEAFY (LFY)