PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019347.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 258aa    MW: 28437.7 Da    PI: 5.0585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019347.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08144184954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Aco019347.1 144 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 184
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-15140194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-14141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-13141193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6145184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-6158189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDNITTTNTN SSSSWDLEMS MGSHPFLLFD YHQPPFQLVH PSSEAILPLI HAHNIPSPCF  60
STPPPHIEAA PAAAAAAADH HRDQEEEEEE EEEEEEDREG GEGEREEEVY KIAAMQPVDI  120
DPSTIKKPRR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY  180
VKFLKRQVQE LQSNPPPPPP PPPPIASAPH RATFLGAVPL SAPVDWAVHG ASSSSSSSHQ  240
GLGFGFIAPK QPWDALN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088459.11e-126transcription factor HEC2-like
TrEMBLA0A2H3YTL53e-56A0A2H3YTL5_PHODC; transcription factor HEC3-like
STRINGXP_008803692.15e-57(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.13e-33bHLH family protein