PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco019514.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

BBR-BPC

Protein Properties

Length: 393aa MW: 44006.2 Da PI: 10.4277

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco019514.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	360.9	2.5e-110	86	392	15	301
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslq 112 p++++ke+ +++l+++++erd++i+ernla+sekkaa+aerdma +qrd+a+aer+ a++erd++++al+l+++s ++ ++++ + ++ ++ ++ Aco019514.1 86 MPQHQMKEHHTMKLIALMTERDTAIQERNLAISEKKAALAERDMAIMQRDTAIAERDSAIIERDDAIAALELARESGMNGNAKNLHNHQHNHQHHNNL 183 36779*****************************************************************99997766644444433333333222 PP GAGA_bind 113 qlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................. 186 pql+d +++ +re++++ea+pi+ a e+ +++k+k++++++k+++ + + k +s ++k+++ ++d + Aco019514.1 184 S--VvqpspPQLSDAPYDhVREMHIMEAYPISAALENDMKARKPKQTRKESKAQAAPSPSMKSSS--KRKSKRVGGDDLNssqvtiakthhnggggvk 277 2..234688*****9*************99999999966666665555555555544..444444444443335799999*****9 PP GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284 +k+e+k++dl+ln+v++Dest+PvPvCsCtG+ r CYkWGnGGWqS+CCttt+S+yPLPv++++r+aR++grKmS++af+klL+++aaeG+dls pvD Aco019514.1 278 KKNEWKDQDLGLNQVTFDESTMPVPVCSCTGKFRPCYKWGNGGWQSSCCTTTLSMYPLPVMANKRHARMGGRKMSGSAFSKLLSRVAAEGHDLSMPVD 375 9********************************************************************************************* PP GAGA_bind 285 LkdhWAkHGtnkfvtir 301 LkdhWAkHGtn+++ti+ Aco019514.1 376 LKDHWAKHGTNRYITIK 392 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.7E-122	68	392	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-96	85	392	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MTADIGRTGD RGLTNINQFT HRKLFFTIPG SFLYIPFFRA TYSGHKKSIG AKKWRKLGTF 60 HAHCRQLHFH HGTSRKCISS EHSVMMPQHQ MKEHHTMKLI ALMTERDTAI QERNLAISEK 120 KAALAERDMA IMQRDTAIAE RDSAIIERDD AIAALELARE SGMNGNAKNL HNHQHNHQHH 180 NNLSVVQPSP PQLSDAPYDH VREMHIMEAY PISAALENDM KARKPKQTRK ESKAQAAPSP 240 SMKSSSKRKS KRVGGDDLNS SQVTIAKTHH NGGGGVKKKN EWKDQDLGLN QVTFDESTMP 300 VPVCSCTGKF RPCYKWGNGG WQSSCCTTTL SMYPLPVMAN KRHARMGGRK MSGSAFSKLL 360 SRVAAEGHDL SMPVDLKDHW AKHGTNRYIT IK*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MTADIGRTGD RGLTNINQFT HRKLFFTIPG SFLYIPFFRA TYSGHKKSIG AKKWRKLGTF  60
HAHCRQLHFH HGTSRKCISS EHSVMMPQHQ MKEHHTMKLI ALMTERDTAI QERNLAISEK  120
KAALAERDMA IMQRDTAIAE RDSAIIERDD AIAALELARE SGMNGNAKNL HNHQHNHQHH  180
NNLSVVQPSP PQLSDAPYDH VREMHIMEAY PISAALENDM KARKPKQTRK ESKAQAAPSP  240
SMKSSSKRKS KRVGGDDLNS SQVTIAKTHH NGGGGVKKKN EWKDQDLGLN QVTFDESTMP  300
VPVCSCTGKF RPCYKWGNGG WQSSCCTTTL SMYPLPVMAN KRHARMGGRK MSGSAFSKLL  360
SRVAAEGHDL SMPVDLKDHW AKHGTNRYIT IK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020114615.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_020114616.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_020114617.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_020114618.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_020114619.1	0.0	barley B recombinant-like protein D isoform X1
Swissprot	Q5VSA8	1e-127	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A199W2C5	0.0	A0A199W2C5_ANACO; Barley B recombinant-like protein D
STRING	XP_008776328.1	1e-139	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	2e-96	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Aco019514.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]