PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019552.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 244aa    MW: 27245.9 Da    PI: 9.6462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019552.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.1e-186851298
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 +++ +++pkkf+++++g+   s  + l++++g+ W++ +  +k+++ ++l++GW eF  a++++e+D + F+ +++s+f   v +++
  Aco019552.1  6 TKC-MSIPKKFVDNFNGQ--ISNVVDLKTPRGNIWTIGV--TKSQDNIFLQSGWTEFIAAHRIEENDLLFFTCKRNSSF--EVAIYD 85
                 455.********998888..7889***************..*******************************9998999..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.874187IPR003340B3 DNA binding domain
CDDcd100174.94E-17585No hitNo description
Gene3DG3DSA:2.40.330.103.5E-19589IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-8587IPR003340B3 DNA binding domain
PfamPF023621.8E-15784IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-19892IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVEDFTKCMS IPKKFVDNFN GQISNVVDLK TPRGNIWTIG VTKSQDNIFL QSGWTEFIAA  60
HRIEENDLLF FTCKRNSSFE VAIYDESGCE KASPFFVKKN ARKTREGDGA IPAETRNEGN  120
RRRKVINLCS SGSSSENDVE QKISRKSLHA NNKTGGAIPR TNEKHKALPE EPVGTGYGIF  180
DNDLTYYVRS NLKPRRRAAL ALALAVNVSY AKGVYPSPLM ALEDEKYRLR YGLAEKGLRH  240
CGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092052.12e-91B3 domain-containing protein Os03g0620400
TrEMBLA0A199VWZ98e-83A0A199VWZ9_ANACO; B3 domain-containing protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-17B3 family protein