PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco019933.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 254aa MW: 29450 Da PI: 7.9558

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco019933.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.8	3.7e-28	123	216	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA+++GFs+rk++++k k+++ +t ++vCskeg+++++ ++ + + +++ + trtgCka+++vk+++dgkwev ++ eHnH+l+ Aco019933.1 123 RFYNLYAYKTGFSIRKATHYKAkKKDNIVTALHYVCSKEGQSKPKVRDqenKGTPKKQMQYTRTGCKAHMRVKRTNDGKWEVVVFVREHNHALV 216 5*****************995677788999*******999885445556779999*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-26	123	216	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
KMAKNKEIIS YLEDLVANNV VTSPVSVTES QDEIDDHEGS SQMNSEEYYE SLFLDATQNR 60 SNYGEESEYP SSDIGINQST DFCSFMHEQS QQEKNFISQC SMKTSHHEPF IGQLLHDEEE 120 VKRFYNLYAY KTGFSIRKAT HYKAKKKDNI VTALHYVCSK EGQSKPKVRD QENKGTPKKQ 180 MQYTRTGCKA HMRVKRTNDG KWEVVVFVRE HNHALVASPS KARFLRISQQ VKLCHLWQKE 240 KEEHRILTSL ERT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081479.1	2e-46	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A199W8T7	1e-157	A0A199W8T7_ANACO; Protein FAR1-RELATED SEQUENCE 5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-20	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Aco019933.1