PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco020033.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 327aa MW: 36737.6 Da PI: 8.1081

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco020033.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.6	8.1e-56	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL++kv++ + + ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ g Aco020033.1 5 LPPGFRFHPTDEELITYYLTRKVTEFGFVA-RAIADVDLNKCEPWDLPGKASMGEKEWYFFSMRDRKYPTGLRTNRATDAGYWKTTGKDKEIFH-CGV 100 79***********************999.89***********988999************************************.9 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgekt+Wvmheyrl Aco020033.1 101 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 130 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-65	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	5	151	IPR003441	NAC domain
Pfam	PF02365	3.1E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT YYLTRKVTEF GFVARAIADV DLNKCEPWDL PGKASMGEKE 60 WYFFSMRDRK YPTGLRTNRA TDAGYWKTTG KDKEIFHCGV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL QSKFPFRTTK EEWVVCRVFK KSSILKKPQA GSPPLPSLLE SPCNTNSLSE 180 LGEIDVSVLN NLMNASSSTS DIQANENISN KVDMSTYMHW VLAREAAASQ NTLPWPPNLL 240 GSVLASNPGI LKALPLINCY NQPREGTNLA NLSSFVAHGD GIFANESKLS FNGSSSKGAE 300 CAQQQQQQQQ QQQQEAFDQE AIWRGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-58	4	157	19	174	NAC domain-containing protein 19
3swm_B	6e-58	4	157	19	174	NAC domain-containing protein 19
3swm_C	6e-58	4	157	19	174	NAC domain-containing protein 19
3swm_D	6e-58	4	157	19	174	NAC domain-containing protein 19
3swp_A	6e-58	4	157	19	174	NAC domain-containing protein 19
3swp_B	6e-58	4	157	19	174	NAC domain-containing protein 19
3swp_C	6e-58	4	157	19	174	NAC domain-containing protein 19
3swp_D	6e-58	4	157	19	174	NAC domain-containing protein 19
4dul_A	6e-58	4	157	16	171	NAC domain-containing protein 19
4dul_B	6e-58	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097045.1	0.0	NAC domain-containing protein 92 isoform X1
TrEMBL	A0A199UQM9	0.0	A0A199UQM9_ANACO; Protein CUP-SHAPED COTYLEDON 2
STRING	XP_008807109.1	1e-161	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-105	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Aco020033.1