PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco020046.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRF

Protein Properties

Length: 309aa MW: 34432.8 Da PI: 8.9176

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco020046.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	59.3	6.6e-19	126	165	3	42
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 e +rC RtDGKkWRCsr++ ++ k+C++H+ r r rsrk+ Aco020046.1 126 EARRCHRTDGKKWRCSREAAPDRKYCDHHMRRTRPRSRKH 165 789***********************************98 PP
2	QLQ	40.7	7.4e-15	67	102	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+++L +Q+l+yK+++a++PvP Ll ++++ Aco020046.1 67 PFTAVQWAELQRQALIYKHIIASVPVPYCLLIPVSN 102 8**************************999999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-6	66	102	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.563	67	102	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-10	67	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	20.806	124	168	IPR014977	WRC domain
Pfam	PF08879	3.5E-15	126	165	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MESNTAEVGE KRDRSHDQED LGHSFGFKCN SFHTLVRSPV IAEARTSGGG GGGGVGGVTM 60 ATTSAFPFTA VQWAELQRQA LIYKHIIASV PVPYCLLIPV SNLEFVNMYF IHAVYNLKHL 120 NTMELEARRC HRTDGKKWRC SREAAPDRKY CDHHMRRTRP RSRKHAIETR KTTTAPPNLN 180 FLSKSTDPKT KPTSNFREEI TFNTIHQQQY KNKLMLNHTD LNRFCFPFPD ESSICSRKEN 240 VDVFKTDGNV ISSLSISTLL RLSVSCNTME GSRSSIGGPL GEVLVSLSES SSSDSPSFAQ 300 SENVRVGE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085364.1	0.0	growth-regulating factor 7-like
TrEMBL	A0A199VQ44	0.0	A0A199VQ44_ANACO; Growth-regulating factor 5 (Fragment)
STRING	XP_008811877.1	4e-34	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22558	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-27	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Aco020046.1