PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco020102.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 173aa MW: 19648.3 Da PI: 4.8965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco020102.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.2	4.3e-41	14	114	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaC++l rkC++dC lapyfpa++p+kfa vhk+FGasnv+k+l+ ++e++reda++s+vyeA+ar+rdPvyG+++ i+ lq+ l+ l+++l++++ Aco020102.1 14 PCAACRTLHRKCSPDCLLAPYFPADEPEKFASVHKVFGASNVIKMLQVVEETRREDAVQSMVYEANARLRDPVYGCTNAISYLQKCLKDLQKQLEATR 111 7***********************************************************************************************99 PP DUF260 99 eel 101 e++ Aco020102.1 112 EQI 114 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.803	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-41	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDSEFGARAK AELPCAACRT LHRKCSPDCL LAPYFPADEP EKFASVHKVF GASNVIKMLQ 60 VVEETRREDA VQSMVYEANA RLRDPVYGCT NAISYLQKCL KDLQKQLEAT REQILESRKQ 120 NDQLLEVLRD EPCHYSSIYF LAENNYVCGT NNFLSDDVDQ FGFCTDRCQM IL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-40	11	115	8	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-40	11	115	8	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097687.1	1e-126	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-41	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A199URY5	1e-125	A0A199URY5_ANACO; LOB domain-containing protein 12
STRING	XP_008781832.1	8e-71	(Phoenix dactylifera)
STRING	XP_008781843.1	8e-71	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17783	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-39	LBD family protein

Link Out ? help Back to Top
Phytozome	Aco020102.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]