PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020311.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 451aa    MW: 51160.6 Da    PI: 7.0448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020311.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-19157203148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+q+G ++W+ Ia++++ gR +kqc++rw+++l
      Aco020311.1 157 KGQWTLEEDRLLINLVEQYGVRRWSQIAQMLP-GRIGKQCRERWHNHL 203
                      799*****************************.*************97 PP
2Myb_DNA-binding56.27.7e-18209251145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd +l++a+++ G++ W+ Ia++++ gRt++ +k++w+
      Aco020311.1 209 KDTWSEEEDRILIQAHTEVGNK-WAEIAKRLP-GRTENAIKNHWN 251
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.278152207IPR017930Myb domain
SuperFamilySSF466891.94E-32155250IPR009057Homeodomain-like
SMARTSM007171.4E-18156205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-29158210IPR009057Homeodomain-like
CDDcd001672.78E-17160203No hitNo description
PfamPF139219.6E-19160217No hitNo description
PROSITE profilePS5129422.079208258IPR017930Myb domain
SMARTSM007172.7E-17208256IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-22211256IPR009057Homeodomain-like
CDDcd001671.05E-13211254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDFGNFKPNI GDHPPFEMCY GNCIGQEFEH SVHNPFDVAV SGYSYPCTSF HDYIRPNIAT  60
SQSLPDMFNG GFSSYAGGIL HYPQGAMSIN HHQMEIADHI HRSVVHNKMS FAPPCEHSRS  120
EAGSSRAFGR LDMGSKYTSA GKKPTAAKIQ KNADVVKGQW TLEEDRLLIN LVEQYGVRRW  180
SQIAQMLPGR IGKQCRERWH NHLRPNIKKD TWSEEEDRIL IQAHTEVGNK WAEIAKRLPG  240
RTENAIKNHW NATKRRQFTR KRTRSSKNPR SCTLLQNYIK SLGQISTSTP KTANEEAAVQ  300
QKSTAEKSKI KMECPPVNCS SSRMAAAHMR VDGHLFEDHL VPTCDDAHGF GPGHDVLMHL  360
MFLDGPKELN ERYDVEMMGH HRMYVNQRLE YYKGVEMEME MEMDAAPVQY CWEEDEDDMA  420
AQVQPANATV KEEIFHGPVG GDGLSERQLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-461542581105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-4515225853159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4515225853159MYB PROTO-ONCOGENE PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097178.10.0transcription factor MYB115-like
TrEMBLA0A199UXC00.0A0A199UXC0_ANACO; Transcription factor MYB98
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-59myb domain protein 98