PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020568.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 823aa    MW: 92024.4 Da    PI: 4.5831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020568.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.3e-10658700246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +rW++ E e +++a++q+G++ ++ I + ++ gRt+ ++k ++ +
      Aco020568.1 658 KRWSKLETEMFYKAIQQFGTD-FEMILQLFP-GRTRHELKAKYKN 700
                      69*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.4E-28650733No hitNo description
SMARTSM007173.0E-9656704IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6658700IPR009057Homeodomain-like
SuperFamilySSF466891.57E-9658706IPR009057Homeodomain-like
CDDcd001672.87E-6659700No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
QILLRLSPSP LSLSLSLSLS LSLSLASLSL SFPASLALSS AAAAVSSGCA AAIGLRSPSS  60
ESMVAELDFL DDIFLEPKEN TEKNVGKFRP KVRAKTAKAA TKPSETAASA STSSSTQKPQ  120
SHDSNVKQKE QVLEPHKGSS GEDAGMPVGL DSNVDPVSPS SADQGAPNKN EESLVHTEAS  180
HDVRQVYEGD VDMQMHHDKS EAQEVLETFS LESGARALSQ VAGTSESVPA VNLSSSSPTK  240
TNTNEQPLVE SEELVNNLKD SIDGSQDREN DHNSHALPGQ GIDELGANML ANMESLDDFS  300
SQPNATGVNN GEKVQPKRQQ KEGKRKSVSF VLPDANDSAA PTENYTEQSN PIETDIPSQD  360
TMACENLEDG LDSSPMPDDW FADFVMKPTK ENDISKDQFF NDFDDTGNQN VEEPNPETAE  420
EVGATKSSRN LRKKSKEKAD VDSDIRTCNL SEMDEVLSDD NDEDDDYNGK DAEKRKRVPR  480
KSRKQKDESE TSNQRRKRTS KKSNSFVEES PKKFSHALRR KRRRGGICLD AARYLVYLHS  540
HPDHGYMEKH FCTATLSKGI CTSKQDSEVD KVLLETPQNE IDRRQISIRN LILLAENNEK  600
NWSKQAAAGQ SVYRRKNPDD FDFFGGEEEN HDNEENGGAQ PSSTKLNYHS YMNRAKSKRW  660
SKLETEMFYK AIQQFGTDFE MILQLFPGRT RHELKAKYKN EERKHPLEVR DALIYRSKDH  720
SHYEELIQKL QIQPEENPQR DTTANQETES QDGISENVED WFEEFTKKTE QEEANEWEDR  780
ENRPMSSNDE KNEAQTPAEV DDFDTAFDSD IRDVEKDFFE GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C5e-1263474256165Transcription factor TFIIIB component B'' homolog
5n9g_H5e-1263474256165Transcription factor TFIIIB component B'' homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519523RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097446.10.0transcription factor TFIIIB component B'' homolog
TrEMBLA0A199W3650.0A0A199W365_ANACO; Transcription factor TFIIIB component B (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.18e-29MYB_related family protein