PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020633.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 211aa    MW: 23464.3 Da    PI: 8.7491
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020633.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.4e-1956110256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Aco020633.1  56 RKKLRLSKEQSAYLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 110
                  788899***********************************************98 PP
2HD-ZIP_I/II129.11.8e-4156146192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Aco020633.1  56 RKKLRLSKEQSAYLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 146
                  69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-1828113IPR009057Homeodomain-like
PROSITE profilePS5007117.16752112IPR001356Homeobox domain
SuperFamilySSF466895.85E-1953121IPR009057Homeodomain-like
SMARTSM003891.0E-1654116IPR001356Homeobox domain
CDDcd000861.37E-1555113No hitNo description
PfamPF000463.7E-1656110IPR001356Homeobox domain
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PfamPF021834.8E-11112146IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-24112155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPSESSSSE EEEEMVEGAG APTSSSPPPN SSVSFQMELS GRRGRGSDEE ENGSPRKKLR  60
LSKEQSAYLE ESFKEHSTLN PKQKIALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY  120
LKRCCETLTE ENRRLHKELA ELRALKTASN PFYMHLPATT LSMCPSCERT TSSSSASRPS  180
PFVSFFSKPP FHPLAAAHSM ASPRQPSATS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6659401e-174KM665940.1 Ananas bracteatus clone 51128b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110120.11e-148homeobox-leucine zipper protein HOX11
SwissprotQ6YPD08e-83HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A199W7181e-104A0A199W718_ANACO; Homeobox-leucine zipper protein HOX27
STRINGLPERR08G14440.17e-84(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-74homeobox from Arabidopsis thaliana