PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020809.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 468aa    MW: 52304.1 Da    PI: 8.7129
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020809.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19898199
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 ffkv+  +d l+++ l +p  f  +h ++  e++ +++l+ + g  W+ +l    +s+++ l++GWkeFv ++ L +gDf+vF++dgr +f   v vf++
  Aco020809.1  8 FFKVF-LPDLLSQH-LEIPPAFR-KHlEN--ESPGMVSLKGPGGSIWNAEL--VENSQGFRLESGWKEFVADHSLAAGDFLVFQYDGRLRF--SVLVFDS 98
                 77877.34666666.******97.66254..46779***************..********************************998777..8888875 PP
2B355.21.3e-17363451498
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  v+  s+v +s  + +p++fa+eh    + ++++tl d++g+ We+ +   ++   + l++GW  F  an+L+  D++vF+l++  + +l+v++fr
  Aco020809.1 363 VMQDSYVYSSFFMNMPRHFAREHLP--KINRKITLWDPQGNPWEISFVCYNTH--CSLSGGWGAFSFANNLEKYDVCVFELVR--KNNLKVHIFR 451
                  56779******************42..35678***************555555..56***********************987..55579*9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-244101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-244101IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-21697No hitNo description
SMARTSM010198.3E-15899IPR003340B3 DNA binding domain
PfamPF023621.1E-16897IPR003340B3 DNA binding domain
PROSITE profilePS5086314.1842199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-23353451IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-25353451IPR015300DNA-binding pseudobarrel domain
CDDcd100174.03E-23358451No hitNo description
SMARTSM010196.4E-17360453IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281360453IPR003340B3 DNA binding domain
PfamPF023621.8E-15362451IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MARSAPHFFK VFLPDLLSQH LEIPPAFRKH LENESPGMVS LKGPGGSIWN AELVENSQGF  60
RLESGWKEFV ADHSLAAGDF LVFQYDGRLR FSVLVFDSTA CDKEAAFSAR RPQCDVIVTI  120
ESSTEEQEKE EEGETVLEDT QAADSSQNDS LGVNSKKRIG VSDSFKNLPP LKKNCNTLSR  180
SASKGSVDCF GKSKKTKTIT SLLACSSPHF GPLSLEGNSL ANANHLKEVP LPSSAQNASQ  240
VAPRERDVMS LAWDNLQNLI VRKANSTPEE DNAPYSQTST PHSSSKKQVN FNEMDSSETT  300
IKSSKSLKLI NYGHVRRRGE AVAKVQKMPS LISQRRPVTQ EEVDRALERA KLFKSKNPST  360
LIVMQDSYVY SSFFMNMPRH FAREHLPKIN RKITLWDPQG NPWEISFVCY NTHCSLSGGW  420
GAFSFANNLE KYDVCVFELV RKNNLKVHIF RVVESIAPLI RRSQLRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1633045619146B3 domain-containing transcription factor VRN1
4i1k_B1e-1633045619146B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106294.10.0B3 domain-containing protein Os11g0197600-like isoform X1
SwissprotQ2R9D22e-56Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A199VRZ00.0A0A199VRZ0_ANACO; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]