PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco020986.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 188aa MW: 20803 Da PI: 4.607

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco020986.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	15	39	22	48
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 + W++Ia +++ gRt++++k++w+++l Aco020986.1 15 P-WSLIAGRLP-GRTDNEIKNHWNTHL 39 5.*******.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.571	1	43	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-7	14	42	IPR009057	Homeodomain-like
Pfam	PF00249	7.9E-7	16	39	IPR001005	SANT/Myb domain
CDD	cd00167	7.02E-7	16	39	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-12	16	39	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSGENSPMKP HWQVPWSLIA GRLPGRTDNE IKNHWNTHLS KRSLTIDDLN LKLNHNLGLS 60 HMHRDSSQGF AAAQLRGNIA EWLTTNDFEP ANLSSELPKF EFDFETLFDF MPRTCDNQNV 120 GGGGGGGGSS SELGVKDYAI IGRDGYMINE DDGDGFFNLN HFGDPPQIGA LDQLTNFQDY 180 EMKTVIT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081728.1	1e-107	transcription factor MYB80-like, partial
Refseq	XP_020084018.1	1e-106	transcription factor MYB57-like
TrEMBL	A0A199V738	1e-105	A0A199V738_ANACO; Transcription factor TT2 (Fragment)
STRING	XP_008778866.1	5e-30	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17778	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-11	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Aco020986.1