PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021291.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-X1
Protein Properties Length: 904aa    MW: 100782 Da    PI: 8.3454
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021291.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.93.2e-06198215119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG H+C  lCH+GpCppCp
  Aco021291.1 198 CG-HTCLLLCHPGPCPPCP 215
                  **.***************8 PP
2zf-NF-X117.49.7e-06250268119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG H+C  +CH GpC pC+
  Aco021291.1 250 CGSHRCPTTCHDGPCLPCR 268
                  ******************6 PP
3zf-NF-X117.11.2e-05357376119
     zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                  CG+H+C + CH+G C + C+
  Aco021291.1 357 CGMHRCPERCHRGACVEnCR 376
                  ***************99886 PP
4zf-NF-X116.42e-05437456120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  C +HkC ++CH+G C pCp+
  Aco021291.1 437 CNNHKCPSPCHRGACSPCPL 456
                  668***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.644100155IPR019787Zinc finger, PHD-finger
SuperFamilySSF578501.77E-8102159No hitNo description
PROSITE profilePS5008910.026103153IPR001841Zinc finger, RING-type
PROSITE patternPS013590103152IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.001198216IPR000967Zinc finger, NF-X1-type
PfamPF014223.4E-4198215IPR000967Zinc finger, NF-X1-type
CDDcd060085.45E-10240288No hitNo description
SMARTSM004380.017250269IPR000967Zinc finger, NF-X1-type
PfamPF014223.5E-4250268IPR000967Zinc finger, NF-X1-type
CDDcd060081.87E-7293334No hitNo description
SMARTSM004380.063303322IPR000967Zinc finger, NF-X1-type
PfamPF014220.066303321IPR000967Zinc finger, NF-X1-type
CDDcd060085.69E-9347396No hitNo description
SMARTSM004380.048357377IPR000967Zinc finger, NF-X1-type
PfamPF014220.0027357376IPR000967Zinc finger, NF-X1-type
CDDcd060084.66E-8400448No hitNo description
SMARTSM004380.024410429IPR000967Zinc finger, NF-X1-type
PfamPF014220.036410428IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-10427475No hitNo description
SMARTSM004380.013437456IPR000967Zinc finger, NF-X1-type
PfamPF014220.0067437455IPR000967Zinc finger, NF-X1-type
SMARTSM0043856500515IPR000967Zinc finger, NF-X1-type
PfamPF0142233504514IPR000967Zinc finger, NF-X1-type
SMARTSM00438110523568IPR000967Zinc finger, NF-X1-type
PfamPF0142222523532IPR000967Zinc finger, NF-X1-type
SMARTSM00438270605655IPR000967Zinc finger, NF-X1-type
PfamPF014220.52605615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038668686IPR000967Zinc finger, NF-X1-type
PfamPF014227.1668685IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13731752IPR000967Zinc finger, NF-X1-type
PfamPF014220.43733745IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MATTTTTTTT TLPPRNPNPN PNSPAPSDHP LLSSSSASDD DDDASDDVSN GDADPSSAAL  60
ERSIFASYLR TSPDDDDAID DDLSKLRSFL SSSSLLRRRL PSCLICLDPL RPSHPVWSCS  120
ASCHALFHLP CIQSWARQSL HLRSPDWPCP KCRSPYPKTL IPKSYFCFCG KVQDPPLDPW  180
ILPHSCGEIC GRPLAGECGH TCLLLCHPGP CPPCPVLASS QCFCGRRADV RRCARRRFSC  240
GEPCNKPLPC GSHRCPTTCH DGPCLPCRVR GTYKCACGAE EQERICAERE FRCDRPCGGT  300
LACGRHECGR GCHAGACGAC PLQGRRTCPC GKKEHLGLSC DAQVPTCGST CGKMLGCGMH  360
RCPERCHRGA CVENCRIVVL KSCRCGSMKK EVPCYQDLTC ERKCQRVRDC GRHACRRRCC  420
GGDCPPCPEI CDRKLRCNNH KCPSPCHRGA CSPCPLMVSI SCYCGETRFE VPCGTEKNQK  480
PPKCSKRCFI SRLCRHKSEC RPHKCHYGAC PPCRMTCGEE LPCGHKCRER CHGPIPPPNP  540
EFTLKPKKKR IGRSIECTPG SPCPPCREIV LVSCFGQHIG EERPLVCSTK KPFPCQNLCG  600
NLLPCGNHYC TKSCHVLKSQ LFVLDHNEKH ENSHQQESII LPFNAQSPLA EPCEECYLPC  660
QKDREPSCSH PCPLRCHSDN CPPCKVLVKR ACHCGAMVHV FECLYYNSMS DEEQQRVRTC  720
SGPCHRKLPN CPHLCSEICH PGQCPSSDRC LKKVNVRCAC NTVKREWLCQ DVVKAYRNAG  780
RDPKDVSKTQ FGVGLLPCGV DCKRKVKVVD SELHLRKANE IKSPVVEAAD VPKRRKRRER  840
VQETKQISKF QEIKKTIWRC LLVMLLFIVV VLIAYFGYKG IFWLSDRMNE IEEQRMRKRL  900
PRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1831837PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103283.10.0NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A199V0D30.0A0A199V0D3_ANACO; NF-X1-type zinc finger protein NFXL2
STRINGXP_008793296.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors