PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco021320.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 330aa MW: 34497 Da PI: 10.3081

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco021320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.7	3.8e-31	263	320	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h+ Aco021320.1 263 DEYSWRKYGQKPIKGSPYPRGYYKCSTLrGCPARKHVERAPDDPAMLIVTYEGEHRHT 320 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.9E-20	205	259	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.3E-32	249	320	IPR003657	WRKY domain
PROSITE profile	PS50811	30.205	256	322	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-26	259	321	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	261	321	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	263	319	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MIQEAAAAGI RSVERLIAQI SRQQESAPAP APAPVDCREI ADFTVAKFRK LISVLNRTGH 60 ARFRRGPSAP VEEEDEEEPP LRTLTLAPNP PKPSPSPGKG PATGLALSLD FGKAIGIGAG 120 EESFSISSAN SSFLSSITGD GSVSNGRQGG AASSSSLLFA PPSSASAAAA GKPPLIRGAT 180 ATATASASAA AAGKPPLMSS SPLIKKRCHG HGHGHGHAHA EDVAGKYGVN GGRCHCSKRR 240 KLRVKRTIRV PAISSKVADI PPDEYSWRKY GQKPIKGSPY PRGYYKCSTL RGCPARKHVE 300 RAPDDPAMLI VTYEGEHRHT HDPSHPLNA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-20	258	319	14	74	Probable WRKY transcription factor 4
2lex_A	1e-20	258	319	14	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269\|PubMed:16623886}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269\|PubMed:15618416, ECO:0000269\|PubMed:16623886}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091294.1	1e-164	WRKY transcription factor WRKY51-like isoform X1
Refseq	XP_020091295.1	1e-164	WRKY transcription factor WRKY51-like isoform X2
Swissprot	Q0JEE2	3e-93	WRK51_ORYSJ; WRKY transcription factor WRKY51
TrEMBL	A0A199UMX4	1e-157	A0A199UMX4_ANACO; Putative WRKY transcription factor 11 (Fragment)
STRING	XP_008801524.1	1e-107	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	7e-79	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	Aco021320.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Xie Z, et al. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J., 2006. 46(2): p. 231-42 [PMID:16623886] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang ZL, et al. A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells. Plant Mol. Biol., 2009. 70(1-2): p. 139-51 [PMID:19199048] Hwang SH, et al. OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae. Plant Cell Rep., 2016. 35(9): p. 1975-85 [PMID:27300023]