PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021548.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 577aa    MW: 64977.5 Da    PI: 5.1538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021548.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH344.8e-1193118227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C ++ +tGtC+yG +CkF+H+p
  Aco021548.1  93 DEPDCEYYVKTGTCWYGMSCKFNHPP 118
                  6899********************96 PP
2zf-CCCH25.72e-08324347225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  ++++C+f++  G CkyG++C++aH
  Aco021548.1 324 GRKECKFYSMPGGCKYGGSCRYAH 347
                  6899******************** PP
3zf-CCCH36.11.1e-11369393226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C+f++rtG Cky ++CkF+H+
  Aco021548.1 369 GERQCSFYMRTGNCKYSANCKFHHP 393
                  7899********************9 PP
4zf-CCCH30.46.6e-10508534127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++f+++GtCk+ ++CkF+H++
  Aco021548.1 508 PGQPECQYFMKSGTCKFKSNCKFHHPQ 534
                  5789*********************97 PP
5zf-CCCH32.41.6e-10544566426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+++ r+G+C+yG+ CkF H+
  Aco021548.1 544 PVCSHYTRFGICSYGSACKFQHP 566
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.92991119IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-491118IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-893118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-595119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-497117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.943322350IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6324347IPR000571Zinc finger, CCCH-type
SMARTSM003560.042324349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5326350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4328347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53367395IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5367394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6369395IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9369393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4373392IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5507534IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056507535IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7509534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5511537IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4513535IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5538566IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319540568IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5540567IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8544566IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4545565IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEVCEEKSKS SSMAEAFSKD FAELRPSEEK SSPDSCSGSE GSGGWEREQE EVGAGSLRTT  60
KSSEGNGWAA KNMKKRGEGN GGGGRQQFPQ RPDEPDCEYY VKTGTCWYGM SCKFNHPPKK  120
KEYKMKGQLG DIVTFGSQAF STPKKFPAPN QDPKEETRET LPSRVTETEC KKVDEQGQDD  180
PSEGGTQLHH EKAIEEKQNE KVERKETKYE KVERQESENE KVAQKGTEYD KVEENESENE  240
KVEQNESENE KVEQKETENE KVEQEETENE NVEQEEIENE KVEQEETEYE KVEQKETENE  300
KVEQKETEKP AQEKVKETIV ESGGRKECKF YSMPGGCKYG GSCRYAHYLG KSDVGSVELN  360
FLGLPIRPGE RQCSFYMRTG NCKYSANCKF HHPDPTADSG RDPTGYSNGE ARKQNTSGTS  420
QVPISPWPEP RTMNEAIHFL DASPSYIPGM ILPQVVHPHQ DWNGYRVPVL PPEMHVQSIS  480
ASAMSHASIK SDIPVHQQAP INEYPERPGQ PECQYFMKSG TCKFKSNCKF HHPQARLKSA  540
SGIPVCSHYT RFGICSYGSA CKFQHPVFSI PHNNTA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6610323e-47KM661032.1 Ananas bracteatus clone 41190 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111806.10.0zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A199VZ880.0A0A199VZ88_ANACO; Zinc finger CCCH domain-containing protein 65
STRINGXP_008796043.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-57C3H family protein