PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco021664.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

TCP

Protein Properties

Length: 356aa MW: 37415.6 Da PI: 5.618

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco021664.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.4	3.6e-36	59	166	7	100
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...............k 89 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqqa+pai+++tgt++ +a ++ +++ + ++s++ + Aco021664.1 59 RNRDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIRWLLQQAEPAIIAATGTGTVPAIAT-TVDGTLQIPTQSAAaglegggggggggedS 155 899********************************************************99999555.444444444444444566677777776542 PP TCP 90 aaksaakskks 100 aak +k +++ Aco021664.1 156 AAKRRKKLQPT 166 22222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.9E-30	60	153	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	60	114	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MELERQDKEE EEEEEEELLR TAAAVPMHRF IVPKPEPMEL FGSLQLIRKQ QQQQAGGGRN 60 RDRHTKVEGR GRRIRMPAVC AARIFQLTRE LGHKSDGETI RWLLQQAEPA IIAATGTGTV 120 PAIATTVDGT LQIPTQSAAA GLEGGGGGGG GGEDSAAKRR KKLQPTRAAA TTTTTPTPAM 180 PTPMPMPMPP AAAAAAAYYP IVADSIFQVG GGGGGGAISM SSGLAPIAAG PQGLLPVWVV 240 PSPGVAAGPS SQAQLWAIPT PPQIIGLAAP PPPEAQPPPS APSGGAAEKG AELQLMGCES 300 EERRRRGGGE EGGDHHHLHH HHHHHHHDHH HHHDDGPEEE EDDEEEPVSE SSNEE*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MELERQDKEE EEEEEEELLR TAAAVPMHRF IVPKPEPMEL FGSLQLIRKQ QQQQAGGGRN  60
RDRHTKVEGR GRRIRMPAVC AARIFQLTRE LGHKSDGETI RWLLQQAEPA IIAATGTGTV  120
PAIATTVDGT LQIPTQSAAA GLEGGGGGGG GGEDSAAKRR KKLQPTRAAA TTTTTPTPAM  180
PTPMPMPMPP AAAAAAAYYP IVADSIFQVG GGGGGGAISM SSGLAPIAAG PQGLLPVWVV  240
PSPGVAAGPS SQAQLWAIPT PPQIIGLAAP PPPEAQPPPS APSGGAAEKG AELQLMGCES  300
EERRRRGGGE EGGDHHHLHH HHHHHHHDHH HHHDDGPEEE EDDEEEPVSE SSNEE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU945866	1e-58	EU945866.1 Zea mays clone 288123 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091451.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	3e-76	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	3e-76	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A199W885	0.0	A0A199W885_ANACO; Transcription factor PCF2
STRING	XP_008809784.1	3e-81	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-44	TCP family protein

Link Out ? help Back to Top
Phytozome	Aco021664.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]