PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco021761.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 346aa MW: 37970.3 Da PI: 6.9358

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco021761.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00021	240	278	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L +A+ YI+ Lq Aco021761.1 240 RKEKLGDRISALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 278 67788899999**9998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.17	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-10	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.95E-6	238	282	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.1E-7	242	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MNRAMFESSL VQQMMVGGNP SWWNNMDNIK PPHQEISPLL PCSTSSAGAV ASSTSSSSSS 60 SSSSSSSLNS FPMYPQYTQS SRFLPFTSWQ DNQGLPDPWN QMLLGGVMEE EERCGFGLQT 120 KKVENWEDHQ LYPSGNSHVF GAKQENLERS AYLCKKYEND QQVLKTTSPW AQSLPASSTK 180 SCVTTNSLST NMLDFSHSKE GKRHLQSEQS SESNSTGTGS PFKKARVQAS SAQSPLIKVR 240 KEKLGDRISA LHQLVSPFGK TDTASVLLEA IGYIRFLQGQ IEALSLPYLD SGSRNPRHCD 300 AAAYEEPKKD LRSRGLCLVP VSFTLHVGGD NGADYWAPAF GEEFR*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MNRAMFESSL VQQMMVGGNP SWWNNMDNIK PPHQEISPLL PCSTSSAGAV ASSTSSSSSS  60
SSSSSSSLNS FPMYPQYTQS SRFLPFTSWQ DNQGLPDPWN QMLLGGVMEE EERCGFGLQT  120
KKVENWEDHQ LYPSGNSHVF GAKQENLERS AYLCKKYEND QQVLKTTSPW AQSLPASSTK  180
SCVTTNSLST NMLDFSHSKE GKRHLQSEQS SESNSTGTGS PFKKARVQAS SAQSPLIKVR  240
KEKLGDRISA LHQLVSPFGK TDTASVLLEA IGYIRFLQGQ IEALSLPYLD SGSRNPRHCD  300
AAAYEEPKKD LRSRGLCLVP VSFTLHVGGD NGADYWAPAF GEEFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020099371.1	0.0	transcription factor bHLH68-like
TrEMBL	A0A2H3XG12	1e-115	A0A2H3XG12_PHODC; transcription factor bHLH68-like
STRING	XP_008783244.1	1e-115	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2167	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco021761.1