PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021974.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 445aa    MW: 49083.9 Da    PI: 6.9785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021974.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.75.9e-91474382373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilkfshl 96 
                  ++lLl+cA a++++d + aq++++ l++ as +gdp+qRl+  f++AL ar ++ +++     p   + +++ s + +++++l  + +++P+++f++ 
  Aco021974.1  47 EKLLLHCAAALEANDITVAQQVMWVLNNVASANGDPNQRLTVWFLRALIARASHLCPTAL---PFALDGSSQsSRRPMTVTELagYIDLTPWHRFGFS 141
                  689**************************************************9665554...3333333331444455555577************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl......... 181
                  +aN+aIl+av+g+++vHi+Df++++++QWp+L+++La+Rp+gpp slRiT+ +++ ++    + ++ee+g rL +fA+  ++p+ef+vl         
  Aco021974.1 142 VANRAILQAVQGHRKVHIVDFSVTHCMQWPTLIDELAKRPQGPPvSLRITVPSAHPPVppsLNIATEEVGLRLMNFAKLRNIPLEFKVLktnspgnsl 239
                  ****************************************99999*****998877668878899************************877777665 PP

         GRAS 182 ...vakrledleleeLrvkpgEalaVnlvlqlhrll......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         ++ l++++L ++ +Eal+Vn++  l +l       d+++  +s +d +L+++ +l+P+vv++++++ad++++s+  r++ +++y + lfd+
  Aco021974.1 240 sfrQQLVTTPLDPSSLGLQDDEALIVNCHNWLRYLSgdsqgnDDNTRDSSSKDGFLEFIHGLNPTVVTMTDEDADLDTPSLSSRIMGCFNYLWILFDA 337
                  53222234456999999999*************99977777644444455799********************************************* PP

         GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                  le+++p+e  er+ +E+  +g++i+n++  eg++r+er e+ ++  +r+++aGF+ v ++e++a  ++ ll++++  g+ ++ e++ lvl+Wk+++ v
  Aco021974.1 338 LETSFPKECPERTGYEAN-VGQKIENIIRFEGSQRIERSESGARFAQRMRRAGFGGVLFDEETARGVRVLLSEHA-SGWGMKREEDMLVLTWKGHSSV 433
                  ******************.********************************************************.889999999************* PP

         GRAS 369 svSaW 373
                  ++SaW
  Aco021974.1 434 FTSAW 438
                  ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.92420420IPR005202Transcription factor GRAS
PfamPF035142.0E-8847438IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGAENRAKYS TTHMAPRNNP SLLRPHPSSL SGALNGCLGC LDGPCIEKLL LHCAAALEAN  60
DITVAQQVMW VLNNVASANG DPNQRLTVWF LRALIARASH LCPTALPFAL DGSSQSSRRP  120
MTVTELAGYI DLTPWHRFGF SVANRAILQA VQGHRKVHIV DFSVTHCMQW PTLIDELAKR  180
PQGPPVSLRI TVPSAHPPVP PSLNIATEEV GLRLMNFAKL RNIPLEFKVL KTNSPGNSLS  240
FRQQLVTTPL DPSSLGLQDD EALIVNCHNW LRYLSGDSQG NDDNTRDSSS KDGFLEFIHG  300
LNPTVVTMTD EDADLDTPSL SSRIMGCFNY LWILFDALET SFPKECPERT GYEANVGQKI  360
ENIIRFEGSQ RIERSESGAR FAQRMRRAGF GGVLFDEETA RGVRVLLSEH ASGWGMKREE  420
DMLVLTWKGH SSVFTSAWVP KVIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-514744088474Protein SHORT-ROOT
5b3h_B1e-514744034420Protein SHORT-ROOT
5b3h_E1e-514744034420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081786.10.0scarecrow-like protein 32
RefseqXP_020091792.10.0scarecrow-like protein 32
TrEMBLA0A199UFZ60.0A0A199UFZ6_ANACO; Scarecrow-like protein 32
STRINGXP_008813173.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein