PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco021976.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 239aa MW: 26295.8 Da PI: 4.4147

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco021976.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.7e-13	60	105	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+ErrRR ++N+ + Lr ++Pk +K+sK ++L+ A++YI Lq Aco021976.1 60 NLEAERRRRGKLNTNILALRAIVPKI-----TKMSKESTLTDAIDYITLLQ 105 5689*******************7.....7*************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.475	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	55	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.20E-11	57	108	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	58	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-11	59	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-12	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MPRRPRGAAA SQAAEAEAEA EAELEAELQG DFVDSVLDME GGIGGETPME KWEMRFKSKN 60 LEAERRRRGK LNTNILALRA IVPKITKMSK ESTLTDAIDY ITLLQKQVLD LQTELLETDG 120 DLIHKNEANE DEEGEKQRSP SSETVAPSVT VQCQGQVELI PMGPNKYQLK IMCKNRMGQF 180 TKVLEALSCF NAEVAEISSV AFFGFSKSVF SVEVKEGEEG EIIELRNLLL ALVGASEN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269\|PubMed:16141453, ECO:0000269\|PubMed:20590996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081804.1	1e-174	transcription factor UDT1-like
Refseq	XP_020091321.1	1e-174	transcription factor UDT1-like
Swissprot	B9FXT3	3e-46	UDT1_ORYSJ; Transcription factor UDT1
TrEMBL	A0A199UFJ0	1e-171	A0A199UFJ0_ANACO; Transcription factor DYT1
STRING	Pavir.Ba00709.1.p	1e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	6e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco021976.1

Publications ? help Back to Top
Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996]