PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco022129.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 159aa MW: 17726.9 Da PI: 5.2987

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco022129.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.3	2.9e-40	7	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGf F Pt+eel+ +yL++k+e+++ ++e+vi+ +d+y v+P++Lp+ + ++ ++w+fF++ ++++a+g r++r+t sgyWkatg+ v+ Aco022129.1 7 PPGFCFYPTEEELLGFYLHNKLENERtEDIERVIPVLDVYGVDPEHLPErageaCRGGGCEQWFFFCPMQEREAQGGRPSRTTPSGYWKATGSPSLVY 104 9********************9995566778***********6355533233667********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ +g kk +vfy+grap+g+kt+W m++yr+ Aco022129.1 105 SAaTSRPIGQKKAMVFYQGRAPSGTKTKWKMNDYRA 140 9878889*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-43	3	147	IPR003441	NAC domain
PROSITE profile	PS51005	42.174	6	158	IPR003441	NAC domain
Pfam	PF02365	1.7E-21	7	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSSSSFPPGF CFYPTEEELL GFYLHNKLEN ERTEDIERVI PVLDVYGVDP EHLPERAGEA 60 CRGGGCEQWF FFCPMQEREA QGGRPSRTTP SGYWKATGSP SLVYSAATSR PIGQKKAMVF 120 YQGRAPSGTK TKWKMNDYRA LDDQEQDIAI LTSSPKVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	1	142	12	144	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	1	142	15	147	NAC domain-containing protein 19
3swm_B	1e-29	1	142	15	147	NAC domain-containing protein 19
3swm_C	1e-29	1	142	15	147	NAC domain-containing protein 19
3swm_D	1e-29	1	142	15	147	NAC domain-containing protein 19
3swp_A	1e-29	1	142	15	147	NAC domain-containing protein 19
3swp_B	1e-29	1	142	15	147	NAC domain-containing protein 19
3swp_C	1e-29	1	142	15	147	NAC domain-containing protein 19
3swp_D	1e-29	1	142	15	147	NAC domain-containing protein 19
4dul_A	1e-29	1	142	12	144	NAC domain-containing protein 19
4dul_B	1e-29	1	142	12	144	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089120.1	1e-115	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-57	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A199VMI2	1e-114	A0A199VMI2_ANACO; NAC domain-containing protein 90
STRING	GSMUA_Achr6P19400_001	4e-65	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-60	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Aco022129.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]