PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022193.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 469aa    MW: 51088.9 Da    PI: 11.0583
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022193.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.99.3e-2561160190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                  +fYn YA ++GFs+rk++++k  k +g +t+ t++Cskeg++++ ++k         +++ +++ ++ +tgCka +++++ ++gkw vt++++eHnHe
  Aco022193.1  61 RFYNVYAFKTGFSIRKATHYKAkKFDGLVTSTTYTCSKEGHANPPNQKkeveedsktNRTPKKEFPNRQTGCKALMRLRMIEHGKWIVTTFHKEHNHE 158
                  5******************99867899**************9988877789988775555566778899***************************** PP

         FAR1  89 la 90 
                  l 
  Aco022193.1 159 LI 160
                  95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2261160IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MIGSSSLMIL NSCEASGKNS ENEPIDQLDQ ESWNQQINQM EKGADESYVG QIFSSVDEAK  60
RFYNVYAFKT GFSIRKATHY KAKKFDGLVT STTYTCSKEG HANPPNQKKE VEEDSKTNRT  120
PKKEFPNRQT GCKALMRLRM IEHGKWIVTT FHKEHNHELI DGQASLWTFN PIEEQARDVY  180
TKNVFMDFRD QLKASTGYRI TQMENNTYKP SSISIHRIRS ASDPWRKAYA WEKARNVGDP  240
EASRQGRSKK ACKTSNPIRF GFPDTLAIRF GLDATRCGRG RAPERTARAL PAASGGAHPR  300
AAHGLGPLWT RARIRMHRTG SARCGRGRTP ARTARVWPAA GAAAHPCGLG PLRERGVAAR  360
TTRALPLRAR QAPARAGPAR CRPGLAPARP AGARPAAGAG STRPHLAGPA RCGCMPASSA  420
GGLRAWPNPQ CAAGGFAGPA RPAARRGAAL RDSGDLMDPA RLAAQSRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.27e-18FAR1 family protein