PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022196.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 485aa    MW: 52442.1 Da    PI: 8.5379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022196.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.2e-105682127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C +++rtG C++G +CkF+H+p
  Aco022196.1 56 PGEPDCTYYLRTGLCRFGMTCKFNHPP 82
                 5789*********************97 PP
2zf-CCCH39.41e-12103127327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++tGtCk+G++CkF H++
  Aco022196.1 103 QPECQYYLKTGTCKFGATCKFDHPK 127
                  799********************96 PP
3zf-CCCH29.51.3e-09186209427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C +++rtG+Ck+G +CkF H++
  Aco022196.1 186 KECAYYLRTGQCKFGYTCKFDHPQ 209
                  68********************97 PP
4zf-CCCH38.61.7e-12346371227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG Ck+G+ C+F+H++
  Aco022196.1 346 DQPECQYYMKTGDCKFGAVCRFHHPK 371
                  689*********************96 PP
5zf-CCCH38.22.4e-12391417127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f++r+G+Ck+G++CkF H++
  Aco022196.1 391 PGEPVCSFYSRYGICKFGPNCKFDHPM 417
                  5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.385583IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-55582IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-85782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-56083IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065100128IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6100127IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5106126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582182210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5183210IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4184209IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7186209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502344372IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5344371IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9346371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5347374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5350372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6389416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906390418IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7390417IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9392417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4395415IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAVAGIGGTR AGADGSSSLS AAAAGAIGAE VDEEAMWQMN LRGSESMEAG HYPERPGEPD  60
CTYYLRTGLC RFGMTCKFNH PPNRKLAVAA ARIKGGYPER IGQPECQYYL KTGTCKFGAT  120
CKFDHPKDKA GFAGRVELNI LGYPLRPKIS SSFQKFGNIP SSDGMFCMVL EYSIKDVRTI  180
AQANEKECAY YLRTGQCKFG YTCKFDHPQP SNAMVTLRGS PVYPSVQSAA SPSQQSFPGL  240
STNWSLSRTS FIASPRWQGP SSYAQLILPQ GLVQVPGWNS YAGRLGSSSP EGQQQVTGSS  300
QYYATSRQSE TTVASAQGMY SSYRPSSVSM GVYAVQRENI FPERPDQPEC QYYMKTGDCK  360
FGAVCRFHHP KERLIPVPNC ALSPLGLPLR PGEPVCSFYS RYGICKFGPN CKFDHPMGTF  420
VYGLSTPSTP EAPTVRRLLG SSSGPPTLTG HAEAGPATSR RLSISDSQHL SSGDESIDRE  480
ASQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6655211e-175KM665521.1 Ananas bracteatus clone 50658 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106816.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A199UTX90.0A0A199UTX9_ANACO; Zinc finger CCCH domain-containing protein 63
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-159zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]