PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022413.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 563aa    MW: 62896 Da    PI: 4.7743
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022413.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.41.5e-1281905622374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cA a++++  e+a+ ++++l++ +s +g+p qRlaay++eALaar+a+s+ ++ykal+++e +     ++laa+++++ev+P++kf++++aN
  Aco022413.1 190 KQLLFDCAAAIAENRIEEAEIIITELRQAVSIQGEPHQRLAAYLVEALAARIASSGRGIYKALKCKEPQ---GNDRLAAMQVLFEVCPCFKFGFMAAN 284
                  589*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  +aIlea++ e+r+HiiDfdi+q  Q+++L+q + s     ++p ++RiTgv+++es+      l  +g+rL+k+Ae +gv fef++ va ++ d+++e
  Aco022413.1 285 HAILEAIKDEDRLHIIDFDINQASQYITLIQMMQSLMaqrKKPFRMRITGVDDSESVrrAIGGLGIVGKRLEKLAEDCGVLFEFRA-VAAKIGDVTPE 381
                  *****************************887765444427777*********9998888899***********************.799******** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +L++++gEa++Vn+++qlh+++desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl rf+e  +yysa+f+sl+a+lpres +ri+vE+++l
  Aco022413.1 382 MLDCRRGEAVVVNFAFQLHHMPDESVSTVNERDRLLRMVKGLRPKLVTMVEQDANTNTAPFLPRFAEVYNYYSAVFNSLDATLPRESADRINVEKQCL 479
                  ************************************************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +reivn+vaceg++r+er e ++kWr+r+++aGF + p+s+++   +++l + ++ d + v+ee+g+l++gW+d+ Lv++SaW+
  Aco022413.1 480 AREIVNIVACEGTDRIERYEAAGKWRARMTMAGFVSCPFSSNTSGAIRALGKSYY-DYFAVKEENGALYFGWEDKILVMASAWK 562
                  *******************************************************.66*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.598163543IPR005202Transcription factor GRAS
PfamPF035145.1E-126190562IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSLISSADPS ATPYVDSNFY ARRNNGDSSG FSMKAFNSDE QFFHYGPDFS GIYSQKYFTG  60
SPTVANVNPL VSSPSIDESL FHPMANTQSP AYLDHPDSSL SSDVSHQSSH SLSDHQILEN  120
SIDFPEEEMR IKLYELEQVL LNDNDEIEEE HLVIEDDWSE PIKNLMLTNS PKESSSDSSL  180
SCTGEARTPK QLLFDCAAAI AENRIEEAEI IITELRQAVS IQGEPHQRLA AYLVEALAAR  240
IASSGRGIYK ALKCKEPQGN DRLAAMQVLF EVCPCFKFGF MAANHAILEA IKDEDRLHII  300
DFDINQASQY ITLIQMMQSL MAQRKKPFRM RITGVDDSES VRRAIGGLGI VGKRLEKLAE  360
DCGVLFEFRA VAAKIGDVTP EMLDCRRGEA VVVNFAFQLH HMPDESVSTV NERDRLLRMV  420
KGLRPKLVTM VEQDANTNTA PFLPRFAEVY NYYSAVFNSL DATLPRESAD RINVEKQCLA  480
REIVNIVACE GTDRIERYEA AGKWRARMTM AGFVSCPFSS NTSGAIRALG KSYYDYFAVK  540
EENGALYFGW EDKILVMASA WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6119656126378Protein SCARECROW
5b3h_A5e-6119656125377Protein SCARECROW
5b3h_D5e-6119656125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6630771e-80KM663077.1 Ananas bracteatus clone 47289 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097030.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A199ULR90.0A0A199ULR9_ANACO; Scarecrow-like protein 1
STRINGXP_008806489.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-176SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]