PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco022888.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 566aa MW: 59148.8 Da PI: 6.587

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco022888.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	293	351	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Aco022888.1 293 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHNHP 351 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	277	353	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-28	285	353	IPR003657	WRKY domain
PROSITE profile	PS50811	29.631	287	353	IPR003657	WRKY domain
SMART	SM00774	3.1E-37	292	352	IPR003657	WRKY domain
Pfam	PF03106	6.4E-27	294	351	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080169	Biological Process	cellular response to boron-containing substance deprivation
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MDKPGGGGGG GGGGLTSNAN SASLGFFTAA DPGRIFFHSR PHSMDTGSFD PPKSVEMDFF 60 SNEKKKSSRG AAAEPDLGLK VPGLAIKKED LTINTGLQLL TANTKSDQST VDDGIYPNEE 120 DKEEKSELAA MQAELGRMNE ENQKLRGMLN QVTSNYNALQ MHLFTLLQQR NQKNVGNQSS 180 HEAVDEKMES GAMVPRQFMD LGPAVADHAT DEASNSSTEG GSLDRSTSPT TNKEVAAIDN 240 ERAAREDSPD DGWIPNKNPK MAPPKGPEQQ AQEATMRKAR VSVRARSEAP MITDGCQWRK 300 YGQKMAKGNP CPRAYYRCTM ATGCPVRKQV QRCAEDRSIL ITTYEGNHNH PLPPAAMAMA 360 STTSAAATML LSGSMSSSAG LMNPNFLART ILPCSTSMAT ISASAPFPTV TLDLTQTPNN 420 QLHQLQRPLA QFGVPLIPSG AAAGPAAPFG AAIPQVIGQA LYNQSKLAGL HMSGDAVPTA 480 VAPPASLADT VTAATAAITA DPNFTAALAA AIASIIGGAH QTGNNNNANN NNAINHNSNN 540 NNNNNSTSSG SGGGGVPTNS NFPAT*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MDKPGGGGGG GGGGLTSNAN SASLGFFTAA DPGRIFFHSR PHSMDTGSFD PPKSVEMDFF  60
SNEKKKSSRG AAAEPDLGLK VPGLAIKKED LTINTGLQLL TANTKSDQST VDDGIYPNEE  120
DKEEKSELAA MQAELGRMNE ENQKLRGMLN QVTSNYNALQ MHLFTLLQQR NQKNVGNQSS  180
HEAVDEKMES GAMVPRQFMD LGPAVADHAT DEASNSSTEG GSLDRSTSPT TNKEVAAIDN  240
ERAAREDSPD DGWIPNKNPK MAPPKGPEQQ AQEATMRKAR VSVRARSEAP MITDGCQWRK  300
YGQKMAKGNP CPRAYYRCTM ATGCPVRKQV QRCAEDRSIL ITTYEGNHNH PLPPAAMAMA  360
STTSAAATML LSGSMSSSAG LMNPNFLART ILPCSTSMAT ISASAPFPTV TLDLTQTPNN  420
QLHQLQRPLA QFGVPLIPSG AAAGPAAPFG AAIPQVIGQA LYNQSKLAGL HMSGDAVPTA  480
VAPPASLADT VTAATAAITA DPNFTAALAA AIASIIGGAH QTGNNNNANN NNAINHNSNN  540
NNNNNSTSSG SGGGGVPTNS NFPAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-23	279	355	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00209	DAP	Transfer from AT1G62300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020100979.1	0.0	probable WRKY transcription factor 31
Swissprot	Q9C519	1e-146	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A199W4G7	0.0	A0A199W4G7_ANACO; WRKY transcription factor 6
STRING	XP_008784385.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5265	36	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-121	WRKY family protein

Link Out ? help Back to Top
Phytozome	Aco022888.1

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]