PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco023128.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 307aa MW: 31804.8 Da PI: 5.0324

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco023128.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg++F + +L H+r+H Aco023128.1 128 HTCEKCGRTFATGQSLGGHMRKH 150 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.84E-7	103	151	No hit	No description
Pfam	PF13913	0.027	107	117	No hit	No description
Pfam	PF13912	8.9E-9	127	152	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.803	128	150	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.0E-4	128	150	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0054	128	150	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	130	150	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MALLVAEKSP QRPQGDDGGS SENEITRDNR TAGGGDGGGG NGEVITKDGF NEPANISVLA 60 AGAEAGAGVG ANIAARNGTV SDVKRGTSSK KKGSSSSSAA GGSGAHTCEK CGRTFATGHS 120 AAGGSGAHTC EKCGRTFATG QSLGGHMRKH YEGPLIIINK KRAREQREET PAPTVDSRVR 180 EPAPPTGRTV ALMAAEEVSC LNAPLESHNP ALLSQSAQAS DGGDCGRNKE EPERSSASNG 240 ACRLLDLDLN ELAEPEEEPK NAPQLEPERK DDDGDDDELL SLRLGQFDIR RSSRISFEIV 300 QPFNSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020109914.1	1e-127	uncharacterized protein LOC109725224

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18524	5	9

Link Out ? help Back to Top
Phytozome	Aco023128.1