PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco023131.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 304aa MW: 32760.6 Da PI: 7.2445

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco023131.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt++LHerFveav+qLGG+++AtPk +l+lm+v+gLt++hvkSHLQkYRl Aco023131.1 18 RQRLRWTHDLHERFVEAVTQLGGPDRATPKGVLRLMGVPGLTIYHVKSHLQKYRL 72 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.896	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.18E-17	17	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-32	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-25	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-23	104	150	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGPDSGGHHP NNASMAARQR LRWTHDLHER FVEAVTQLGG PDRATPKGVL RLMGVPGLTI 60 YHVKSHLQKY RLAKYIPESS ADGMKTEKKD PGDLLSGLES SSGMQITEAL KLQMEVQKRL 120 HEQLEVQRQL QLRIEAQGKY LQKIIEEQQR LSGVLAEGPG LSLPSPPASG GDNLPDPDKT 180 DPSTPAPTSE SPFQDKALLQ DGLLKSQFSH DDDSFSSFRE PLTPDSTCHA AGSPSASPDR 240 NPTHERASKR LRGAMAAGHG KNEVVLAHHI LESSSGLDFQ QHCSVFPAAR GGSGGRFSSS 300 STS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-23	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-23	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-23	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-23	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020109665.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_020109667.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	1e-110	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A199VPK9	0.0	A0A199VPK9_ANACO; Protein PHR1-LIKE 1
STRING	XP_008794707.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	9e-79	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco023131.1