PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023196.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 735aa    MW: 80306 Da    PI: 10.8701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023196.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-11552596147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  ++  q++s+ qky
      Aco023196.1 552 RESWTEPEHDKFLEALQLFDRD-WKKIGAFIG-SKSVIQIRSHAQKY 596
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-14546602IPR009057Homeodomain-like
PROSITE profilePS5129413.437547601IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-4550602IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-16550599IPR006447Myb domain, plants
SMARTSM007177.7E-10551599IPR001005SANT/Myb domain
PfamPF002492.8E-9552596IPR001005SANT/Myb domain
CDDcd001674.96E-7554597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
YERPERRHRR GRWHRQLQLL LNRQCGGCHW GVRQWRRLRG RDSRFGLALI LTALEVVMSA  60
AYPFRFGLGG GLGFGFGFGF GFANCAFLRG LATAAGLLTV VRRPPSEEIG AADPRLLRHL  120
HRELRLVHHQ QKALRQYPFL LPFFLFFLFV LILLLHFLYL LLCLLLSTSF FSFILLALSP  180
TFFPRRLGFL CVHVIFITSL RFCPLQIRRE LAFLLQFFRG LLRFQSLALN GEAPPPSPGS  240
VQGEAGSPGL PFVGEAGPAG VPLGREAVAP LVPLARRRGA AAPAHSAPPR SPLFSGCRGG  300
GAAAGSPEFH LFPFFLLLLY GFELHFYCCF VLRLRLSFVL LPLFFFFFFL FLFLISFSVW  360
VCVRFRGFIQ NAIFWSPLFF FLVFFFTPCL ILFFMSLRLL YLLPACSFCS APTAKTSLPT  420
RSASTASAPP SFSSTPTSTQ PSPPNSSLSP LFSSSSSSSS SSSSSSSSSS SSSPSSSSCT  480
FIDGDPQNRF ANAAIRTGSD LHRISNSAFL GGTHTLTLAA SSSSPSSSSA MDASAEDPSK  540
KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIGAF IGSKSVIQIR SHAQKYFLKV  600
QKNGTSEHLP PPRPKRKASH PYPQKASKNA PQISQTTVPP RAAVLSSDSS SIVRNSNTNI  660
PASSCANTSV QPASATHVAK GLVPIRSEFL KAAEVEAGAE AEMACLGSAP HALVLARAPP  720
ALLASDPTET APPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-52MYB_related family protein