PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023236.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 112aa    MW: 12772.2 Da    PI: 4.5094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023236.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.31.2e-086098138
         FAR1  1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCske 38
                 kfYn++A ++GFs+rk++++k  k ++ it+ t++Csk 
  Aco023236.1 60 KFYNDHAFKIGFSIRKTYHYKAkKYDDAITSVTYCCSKA 98
                 6*******************99567899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-66098IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MREYGSTIGS SVSLCNIDVE NEVNEELEQI ATAEQICMST QPIEEQRVGL EFNSIEDAKK  60
FYNDHAFKIG FSIRKTYHYK AKKYDDAITS VTYCCSKAES LYYKYETGYA E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111535.12e-56protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A199W0P13e-51A0A199W0P1_ANACO; Protein FAR1-RELATED SEQUENCE 5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.17e-08FAR1-related sequence 12