PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023290.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 373aa    MW: 41621.7 Da    PI: 7.3901
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.78.7e-57161431129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdee++++yL  kv ++++++  ++ evd++k+ePwdL++k+k +ekewyfF++rd+ky+tg+r+nrat++gyWkatgkdke+++ +g+
  Aco023290.1  16 LPPGFRFHPTDEEIITHYLSLKVLNRNFSA-IAVGEVDLNKCEPWDLHTKAKLGEKEWYFFCQRDRKYPTGTRTNRATEAGYWKATGKDKEIYRGRGN 112
                  79*************************999.88**************999999********************************************* PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kktLvfy+grapkgekt+Wvmheyrle
  Aco023290.1 113 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143
                  *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6212167IPR003441NAC domain
PROSITE profilePS5100557.96416167IPR003441NAC domain
PfamPF023653.5E-2917142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGDSSILNQG EESIELPPGF RFHPTDEEII THYLSLKVLN RNFSAIAVGE VDLNKCEPWD  60
LHTKAKLGEK EWYFFCQRDR KYPTGTRTNR ATEAGYWKAT GKDKEIYRGR GNLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEY RLEGKLPHPN LPRSLKDEWV VSRIFHKASG IKKPSPVHGL  180
ERINSFEGDL LDSSALPPLM DPLYNYSASP SMVNTNNNNN NSNMVFDPKG FPSTASSTPS  240
FLNPAMIGLD YAQSMIGNYQ LGSGMNPAAN NSALYAQMFN STPLSSYLHH EEGFVAANNY  300
DVSSAIRKHC KVEQQSNQSV VSPSRETGLS TDHNTTEISS VVSRQNYDDH LDGPSSALPV  360
MDIDSILKYC IK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-531317317174NAC domain-containing protein 19
3swm_B7e-531317317174NAC domain-containing protein 19
3swm_C7e-531317317174NAC domain-containing protein 19
3swm_D7e-531317317174NAC domain-containing protein 19
3swp_A7e-531317317174NAC domain-containing protein 19
3swp_B7e-531317317174NAC domain-containing protein 19
3swp_C7e-531317317174NAC domain-containing protein 19
3swp_D7e-531317317174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085798.10.0NAC domain-containing protein 92-like
SwissprotQ9FK441e-102NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A199VGF00.0A0A199VGF0_ANACO; NAC domain-containing protein 100 (Fragment)
STRINGXP_008782760.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-105Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]