PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023307.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 203aa    MW: 23787.8 Da    PI: 8.9926
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023307.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1293.6e-09501181883
         FAR1  18 kskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkkekdgkwevtklel 83 
                  ++kk+k+++ it  ++vCske +++++++ +e++ +       t+t+Cka+l+vk++++++  ++++e+
  Aco023307.1  50 TTKKKKKENMITALHYVCSKESHSKPKSRGAEDKGTpkkLVRYTQTSCKAHLRVKRTNNENITIKEFES 118
                  4567788889****************99995555441004556889******************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-651118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKIESFTAER SQYENDSSSV VACGTESSTN KPFIGQEFEN EETYKKKLPT TKKKKKENMI  60
TALHYVCSKE SHSKPKSRGA EDKGTPKKLV RYTQTSCKAH LRVKRTNNEN ITIKEFESRW  120
AMMIEKYELY NTNHLNVMWN SWHQWVPIYF KEVESINALT KMFTDNHTSV YNFVLQFDKM  180
VSSRYDKENE EDFRSKDGES SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A199VXE41e-104A0A199VXE4_ANACO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26391018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-08FAR1-related sequence 3