PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023433.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 425aa    MW: 46274.4 Da    PI: 8.7313
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023433.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-096389127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C +++rtG C++G +C+++H+p
  Aco023433.1 63 PGEPDCAYYLRTGLCRFGMTCRYNHPP 89
                 5789*********************97 PP
2zf-CCCH24.93.6e-081141301127
                  GTS--TTTTT-SS-SSS CS
      zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                  +tGtCk+G++CkF H++
  Aco023433.1 114 QTGTCKFGATCKFDHPR 130
                  69*************96 PP
3zf-CCCH36.21e-11152176327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C +++rtG+Ck+G++CkF+H++
  Aco023433.1 152 EKECAYYLRTGQCKFGNTCKFHHPQ 176
                  679********************97 PP
4zf-CCCH41.62e-13308333227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C+f+++tG Ck+G++CkF+H++
  Aco023433.1 308 DQPDCQFYMKTGDCKFGASCKFHHPR 333
                  6899********************96 PP
5zf-CCCH36.39.7e-12354379227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ lC f++r+G+Ck+G++CkF H++
  Aco023433.1 354 GEQLCVFYSRYGICKFGPNCKFDHPM 379
                  788*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2396290IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-46289IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-76489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-56790IPR000571Zinc finger, CCCH-type
SMARTSM003560.59107130IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.934114131IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5114130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422149177IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5149176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-6150177IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061306334IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6306333IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10308333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6309336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-6312334IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7352379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544352380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6354380IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8354379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4356377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEFAAAAAAA AAAAARQMRG ARAEVVAAGV DASSSALDEE EILWQMNMRG SESMEYGTYP  60
ERPGEPDCAY YLRTGLCRFG MTCRYNHPPD RRLAIAAASM KGGYPERVGQ PECQTGTCKF  120
GATCKFDHPR DKAGIASRVQ LSILGFPLRP NEKECAYYLR TGQCKFGNTC KFHHPQPSNA  180
VVSLRGSPIY PSVHSPTSPV QQSYPGGLTS WPLSRASFIA SPRWQGPSSY AHLILPQGLV  240
QVPNWNTYPG QLGSVSSSEN RQQSSGNVQL YGTSNQSEPS GGPIGQSDSM PLVQFGLQRE  300
SVFPERPDQP DCQFYMKTGD CKFGASCKFH HPRERLVPAP NCVLSPLGLP LRPGEQLCVF  360
YSRYGICKFG PNCKFDHPMP AHGDLAFQGS TRQARQSPAV RVCGMVPSGL QEFSKMVSRR  420
QRSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6640601e-173KM664060.1 Ananas bracteatus clone 48789a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081898.10.0zinc finger CCCH domain-containing protein ZFN-like, partial
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A199VUT20.0A0A199VUT2_ANACO; Zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-143zinc finger protein 1