PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023558.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 263aa    MW: 30020.5 Da    PI: 10.3898
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023558.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1621981597
                 -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                  l +p++ ae   + ke+s t tl ++ g+ W v+l +r +++r ++ +GW+eF +a++L +gDfv+F+++g++ f  + kvf
  Aco023558.1 21 KLPIPRPIAE--LLTKERSATATLFSPLGKFWHVTL-VRDGDNRLYFDNGWREFSQAHELVAGDFVLFRYEGNMVF--KAKVF 98
                 3555666553..45577999****************.7889999****************************9999..66666 PP
2B358.31.4e-181772581098
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  v ++  l++pk+f +++g+     ++++l+d++ rsW v+l  ++++++  + +GW+eF+  n+L+egD ++F+l++  ++e++v +++
  Aco023558.1 177 VRRRLFLSVPKSFHSSFGLLR---REIVLKDPKKRSWPVTL--WNGKSESRIHRGWREFAVGNNLEEGDKCIFQLIS--SGEMRVLIRK 258
                  44445689******9999873...47***************..99999999***********************986..7778999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.0011101IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-224103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-214103IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.0E-1410101IPR003340B3 DNA binding domain
CDDcd100171.30E-151299No hitNo description
PfamPF023621.5E-132097IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-24157259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20160257IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-21162258No hitNo description
SMARTSM010194.8E-11164260IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733168260IPR003340B3 DNA binding domain
PfamPF023621.4E-15177258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGSQNHRPQF VLLLPPEFLQ KLPIPRPIAE LLTKERSATA TLFSPLGKFW HVTLVRDGDN  60
RLYFDNGWRE FSQAHELVAG DFVLFRYEGN MVFKAKVFNT SGCCKLRGKI VHGVSKRSSG  120
ETKDENRDDI HDQHGTEEPR TPPGFSAKKK SVENENSAPC PPHFEKIMRS CNVSGNVRRR  180
LFLSVPKSFH SSFGLLRREI VLKDPKKRSW PVTLWNGKSE SRIHRGWREF AVGNNLEEGD  240
KCIFQLISSG EMRVLIRKRC CA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196207RREIVLKDPKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102765.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A199UY300.0A0A199UY30_ANACO; Putative B3 domain-containing protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-20B3 family protein