PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco023608.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 390aa MW: 42745.6 Da PI: 9.7341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco023608.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	357	376	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F +++ L++H++++ Aco023608.1 357 CSQCGKPF-NPEKLHSHMKSC 376 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF031043	1.4E-60	6	387	IPR021182	Uncharacterised conserved protein UCP031043
Pfam	PF06136	1.5E-43	16	278	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEMGNGGGGG GEVRRVNVVY FLSRGGKVEH PHLIRVHHLH RAGVRLRDVK RWLSELRGKD 60 MADSFAWSYK RRYRSGYVWQ DLTDDDLITP ISDNEYVLKG SELIPHRPLH PTTTTTTAAA 120 INAQPFPPSS SSSSSFSEKS SRVAAAAEED EEEKEETKEE AAPATTAAAA EKLNPNPNPN 180 PNPNPAETVW IEAAEDDEVL SLNPPPLPPP PPRDSSDESA AQRRSAVFKI DAREAVQQQQ 240 IEEEKEKERG ERMAGESERR SQSRSLRRAS HALRSILTCR AVETNDAALR PVSRRERSSG 300 IGGDGSQLAA RRRTNLEGRR YDSRKSRSGG GKGTKMAGEK VGVASAASFK PFGAPYCSQC 360 GKPFNPEKLH SHMKSCKALK ARAKGYTNL*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEMGNGGGGG GEVRRVNVVY FLSRGGKVEH PHLIRVHHLH RAGVRLRDVK RWLSELRGKD  60
MADSFAWSYK RRYRSGYVWQ DLTDDDLITP ISDNEYVLKG SELIPHRPLH PTTTTTTAAA  120
INAQPFPPSS SSSSSFSEKS SRVAAAAEED EEEKEETKEE AAPATTAAAA EKLNPNPNPN  180
PNPNPAETVW IEAAEDDEVL SLNPPPLPPP PPRDSSDESA AQRRSAVFKI DAREAVQQQQ  240
IEEEKEKERG ERMAGESERR SQSRSLRRAS HALRSILTCR AVETNDAALR PVSRRERSSG  300
IGGDGSQLAA RRRTNLEGRR YDSRKSRSGG GKGTKMAGEK VGVASAASFK PFGAPYCSQC  360
GKPFNPEKLH SHMKSCKALK ARAKGYTNL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020095331.1	0.0	protein UPSTREAM OF FLC isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10794	12	13

Link Out ? help Back to Top
Phytozome	Aco023608.1