PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco023887.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 70aa MW: 7705.19 Da PI: 11.8785

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco023887.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.6	1.1e-09	16	56	50	90
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+ + ++++ +gCka+l+vk+++dg+w+v ++ +Hn +l+ Aco023887.1 16 KRIKGHQTNICGCKAHLRVKRTNDGNWKVVAFVRKHNSALV 56 5566778889***************************8886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-7	16	56	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MFVLKKGNPN QKFGIKRIKG HQTNICGCKA HLRVKRTNDG NWKVVAFVRK HNSALVASPS 60 KAVFFGLIV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A199UGW5	7e-40	A0A199UGW5_ANACO; Protein FAR1-RELATED SEQUENCE 5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	1e-07	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Aco023887.1