PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024332.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 245aa    MW: 25590.3 Da    PI: 6.3414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024332.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.4e-15452155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 sgy+GV  ++ + +WvAeIr+      r    +lg+f tae+Aa+a+++a++ l+g
  Aco024332.1  4 SGYRGVQ-RS-WRKWVAEIRER-----RaHAKWLGTFATAEDAARAYDRAALVLYG 52
                 89****4.55.**********4.....4799********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-15460IPR016177DNA-binding domain
CDDcd000181.09E-12461No hitNo description
PfamPF008471.0E-7452IPR001471AP2/ERF domain
SMARTSM003808.3E-23566IPR001471AP2/ERF domain
PROSITE profilePS5103216.753560IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-21660IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MESSGYRGVQ RSWRKWVAEI RERRAHAKWL GTFATAEDAA RAYDRAALVL YGPRAHLNLQ  60
IIAPPSSSSS NSSTSFSPSP SSSSSPSTVV GASTTSASSS SPSSYSASSS SSSTLRPILP  120
RPSGFPFQLF HPPPPPTNPT YTTNINPIIL YPHPSTATIS GNPVTANPIF PHAVTAAAET  180
PPPPPQEPSY VAGVNCEEIT SLAGSVSSSL SLSCAASPVW GYDDYAAAAA SCLWDDADPF  240
LFDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-112591171Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362212e-52AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence.
GenBankAP0149612e-52AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-52CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081967.11e-171ethylene-responsive transcription factor ABI4-like
TrEMBLA0A199VAM11e-60A0A199VAM1_ANACO; Ethylene-responsive transcription factor ABI4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-09ERF family protein