PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco024354.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YB

Protein Properties

Length: 157aa MW: 17165.2 Da PI: 4.5714

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco024354.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	35.5	2.3e-11	41	109	25	93
NF-YB 25 akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 + kda e + fi ++++ a+d c++ r+tin++d+l a+ ++ f ++++pl++ +++r+ Aco024354.1 41 MTVNKDALVAFTESARIFIHYLSATANDVCKELGRQTINAEDVLRAVEEIEFPEFIAPLRASWEEFRKK 109 357889999999*************************************************99999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.0E-31	9	150	IPR009072	Histone-fold
SuperFamily	SSF47113	3.84E-23	11	136	IPR009072	Histone-fold
Pfam	PF00808	4.9E-9	42	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MAKKGEAVEE LPKAVIRRIV KDKLSQLASA ATSDGGGGEE MTVNKDALVA FTESARIFIH 60 YLSATANDVC KELGRQTINA EDVLRAVEEI EFPEFIAPLR ASWEEFRKKT AVKKSGVKAK 120 ETDKKRKLEE ELPSKGGKNG VEDAEEENDD AEPDDD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	126	RKKTAVKKSGVKAKETDKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020083618.1	1e-108	DNA polymerase epsilon subunit 3
TrEMBL	A0A199VB19	1e-101	A0A199VB19_ANACO; DNA polymerase epsilon subunit 3
STRING	BRADI4G38527.1	1e-51	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-33	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Aco024354.1