PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024489.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family TCP
Protein Properties Length: 355aa    MW: 39433.8 Da    PI: 9.4736
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024489.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.69e-42922512136
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnss 86 
                  a++kdrhski T+ g+RdRR+Rls e+a++fFdLqd+LGfdk+skt++WLl+++k+aik+ +               ++ss s++        +    
  Aco024489.1  92 APRKDRHSKIDTAAGPRDRRMRLSREVARKFFDLQDMLGFDKASKTVQWLLTMSKAAIKDVAAVsnsnlcwdgglkcTQSSTSDS--------E---- 177
                  89***********************************************************999444444444444311111111........1.... PP

          TCP  87 sg.........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                   +                         k  k+ +   k+ + a++   +akesra arararertre++r+++++
  Aco024489.1 178 -DvvltnlgnnfmgkfsemaarasdglKIPKERKAAAKPLRIASHDPIFAKESRALARARARERTRERKRMRWVN 251
                  .12233333445566777778888887333333344555555555678999*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.7E-4094247IPR005333Transcription factor, TCP
PROSITE profilePS5136933.11894152IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.241227244IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLPLPDSQNN SDKSFYPQLE LYPPSPKLDY TTFSLPFSSP TLFPEGLLCE ASFIDFSLPA  60
PLDPLLNNSM ATAPISPPIR KRGGGGTGGQ RAPRKDRHSK IDTAAGPRDR RMRLSREVAR  120
KFFDLQDMLG FDKASKTVQW LLTMSKAAIK DVAAVSNSNL CWDGGLKCTQ SSTSDSEDVV  180
LTNLGNNFMG KFSEMAARAS DGLKIPKERK AAAKPLRIAS HDPIFAKESR ALARARARER  240
TRERKRMRWV NLASPVRIEP MERGSRSHYM NDQSGELVGD VEEISFSSFY QGAFLKPVGE  300
RTHEYHMSRG SNEVLVFDYS PSIVSTNSTV GVFEEQLNME GVLMADAHLY SRAW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237247RERTRERKRMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6617882e-66KM661788.1 Ananas bracteatus clone 44690 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103534.10.0transcription factor TEOSINTE BRANCHED 1-like
TrEMBLA0A199UQQ40.0A0A199UQQ4_ANACO; Transcription factor TEOSINTE BRANCHED 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-24TCP domain protein 12