PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025081.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 628aa    MW: 66322.7 Da    PI: 5.1386
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025081.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.94.3e-1282456221374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++L++cAeav+ ++l++a+alL+++s la+++g +m+++aayf+eALa+r+++         pp++++   s      +  f+e+sP+lkf+h+ta
  Aco025081.1 245 LVHALMACAEAVQRENLAAADALLKEISVLAASQGGAMRKVAAYFAEALARRIYN-------LRPPRPDA---SLFYDLLYAHFYEASPCLKFAHFTA 332
                  689***************************************************9.......23444444...5555566778*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.. 194
                  NqaIlea++g++rvH++D+++ qGlQWpaLlqaLa Rp+g+ps+R+T+vg+p+  s ++l+e+g++La+fA++++v+f++++lva +l+dl+  +L  
  Aco025081.1 333 NQAILEAFAGCRRVHVVDLGVRQGLQWPALLQALALRPGGAPSFRLTAVGPPA--SGDALREVGWKLARFADAVRVDFRYRPLVAASLADLDAYTLqr 428
                  ***************************************************77..99***************************************88 PP

         GRAS 195 ..........rvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                            +v++      +Ea+aVn vl+lh++l++ ++ e+    vL +v+ l+P+v++vveqea+hn++sF +rf+eal+yys++fdsle   +
  Aco025081.1 429 psaaaaaaaaEVEEeeeeaaEEAVAVNAVLELHQVLAQLGAAEK----VLGTVRALRPRVFTVVEQEANHNAGSFRDRFTEALHYYSTVFDSLEGCGS 522
                  87777776663333667788****************99999999....*********************************************99978 PP

         GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg..yrveeesgslvlgWkdrpLvsvS 371
                  + s++r++ E+  +grei nvv ceg er+erhetl++Wr r+++aGF+pvp++++a kqa++ll+ ++ + g  +rvee++g+l+lgW++rpL+++S
  Aco025081.1 523 AGSSDRVMAEAY-VGREIANVVGCEGPERTERHETLAQWRGRMGRAGFHPVPIGSDAFKQASTLLALFSgGGGggFRVEEREGCLTLGWHTRPLIATS 619
                  888888777776.*******************************************************9533367*********************** PP

         GRAS 372 aWr 374
                  aWr
  Aco025081.1 620 AWR 622
                  **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.8E-2946122IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011299.5E-2646128No hitNo description
PROSITE profilePS5098562.131219599IPR005202Transcription factor GRAS
PfamPF035141.5E-125245622IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MKREHQDSSY GDGGGGGGAS GYAADMGKGK KTITEDAKSK EEEEMDELLA TLGYKVRSSD  60
MADVAQKLEQ LDMAMAMGSC AAPDDGFLLS QLHLPPSDVV HYNPSDLSSW LDSMISELNA  120
PPPPLPPPPA AAAAAEPILT TAEHQHRYFD LPSAVPAAEC DLKTIPAPAV DPAVFGSDPC  180
SEVTRDRKRM RIGASAASSS SSSSSSPSPS SASSLGSGGR GAEAVPVPVP VPVVVVDSQE  240
AGIRLVHALM ACAEAVQREN LAAADALLKE ISVLAASQGG AMRKVAAYFA EALARRIYNL  300
RPPRPDASLF YDLLYAHFYE ASPCLKFAHF TANQAILEAF AGCRRVHVVD LGVRQGLQWP  360
ALLQALALRP GGAPSFRLTA VGPPASGDAL REVGWKLARF ADAVRVDFRY RPLVAASLAD  420
LDAYTLQRPS AAAAAAAAEV EEEEEEAAEE AVAVNAVLEL HQVLAQLGAA EKVLGTVRAL  480
RPRVFTVVEQ EANHNAGSFR DRFTEALHYY STVFDSLEGC GSAGSSDRVM AEAYVGREIA  540
NVVGCEGPER TERHETLAQW RGRMGRAGFH PVPIGSDAFK QASTLLALFS GGGGGGFRVE  600
EREGCLTLGW HTRPLIATSA WRAAPTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6325262125377Protein SCARECROW
5b3h_D1e-6325262125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a negative regulator of GAMYB gene expression. {ECO:0000269|PubMed:12011349, ECO:0000269|PubMed:12011350, ECO:0000269|PubMed:12468736}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6643330.0KM664333.1 Ananas bracteatus clone 49134b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093282.10.0DELLA protein SLN1-like
SwissprotQ8W1270.0SLN1_HORVU; DELLA protein SLN1
TrEMBLA0A199W8K90.0A0A199W8K9_ANACO; DELLA protein DWARF8
STRINGGRMZM2G024973_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-160GRAS family protein