PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco025200.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 79aa MW: 8447.87 Da PI: 10.4456

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco025200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47.6	4.9e-15	4	64	1	56
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C++ C ++p++ p++q++++ +++k++G++ +++ll+a p++ r++ Aco025200.1 4 SCNGCRVLRKGCSEACSIRPCLqwirsPDSQANATVFLAKFYGRAGLINLLNAGPDHLRPA 64 6*******************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.958	3	78	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-11	4	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEACS IRPCLQWIRS PDSQANATVF LAKFYGRAGL INLLNAGPDH 60 LRPAYIPVAA RTRPAAGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	4e-67	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777707.1	3e-39	PREDICTED: LOB domain-containing protein 40-like
Refseq	XP_019255294.1	2e-39	PREDICTED: LOB domain-containing protein 42-like
Refseq	XP_020088069.1	2e-40	LOW QUALITY PROTEIN: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-36	LBD41_ARATH; LOB domain-containing protein 41
Swissprot	Q9ZW96	6e-37	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A199UMM7	2e-39	A0A199UMM7_ANACO; LOB domain-containing protein 41
STRING	XP_009777707.1	1e-38	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	2e-39	LOB domain-containing protein 40

Link Out ? help Back to Top
Phytozome	Aco025200.1