PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025362.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 261aa    MW: 28115 Da    PI: 10.142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025362.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-1373118454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h+e+ErrRR+riNs +++Lr ++P a      K++Ka+ L k+v+ +k+L
  Aco025362.1  73 IHSEAERRRRERINSHLSTLRCMIPDA-----HKMDKASLLSKVVDQVKDL 118
                  59************************9.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.36469118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1373130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1074118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1374121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1175124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.0E-5160208No hitNo description
PROSITE profilePS516718.902160238IPR002912ACT domain
CDDcd048731.22E-7161227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAKCYASTDE GKQVVVSFPS LYKGSLILPR PTTAATTTTT TTTPRPLLRS GSPSCSSASS  60
SSSSVAAARA SKIHSEAERR RRERINSHLS TLRCMIPDAH KMDKASLLSK VVDQVKDLKR  120
KANDTSKTVN VPPEIDEVTV ERHKGGRDHT FSGDETLRMR VSVTCDDRPD LFASLIQAFH  180
KLRLRTIRAD ITCIGGRVQN VFILCGTGEG SENMCLGSLK ECLKEALAKA ASPEVLLSSS  240
SSSSSSSSFS SKRQRLLGSH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102609.10.0transcription factor bHLH30-like
TrEMBLA0A2H3Y3J83e-74A0A2H3Y3J8_PHODC; transcription factor bHLH51-like
STRINGXP_008792668.15e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-30bHLH family protein