PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco025712.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 257aa MW: 29286 Da PI: 7.7631

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco025712.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ll +++ +G g+W++ ++ g++R++k+c++rw++yl Aco025712.1 14 RGAWTSHEDKLLSEYIMAHGLGRWRSLPADAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	57.2	3.9e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl Aco025712.1 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112 7999****************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.947	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.87E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.99E-8	16	61	No hit	No description
PROSITE profile	PS51294	27.794	62	116	IPR017930	Myb domain
SMART	SM00717	1.5E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-16	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-26	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.04E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0006970	Biological Process	response to osmotic stress
GO:0010023	Biological Process	proanthocyanidin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGRKACCPKE GLNRGAWTSH EDKLLSEYIM AHGLGRWRSL PADAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT YLRKKVFGGD 120 GESSPKAKKR SSAKHNTESS DDSSVNIVRT KAVRCTRSHF ADLAPNQILD QDVGGFCTVD 180 NNMQNLLFPQ TPTESSYVSY DSFENNYGVI DIDPLTIKDI SGCMRQEEDE ELFSLIDNDV 240 WDLLELPNKK YKLQRD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082728.1	0.0	myb-related protein 308-like
Refseq	XP_020114552.1	0.0	myb-related protein 308-like
Swissprot	Q9FJA2	8e-62	TT2_ARATH; Transcription factor TT2
TrEMBL	A0A199V1S2	0.0	A0A199V1S2_ANACO; Transcription factor TT2
STRING	GSMUA_Achr3P27700_001	1e-89	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-61	MYB family protein

Link Out ? help Back to Top
Phytozome	Aco025712.1

Publications ? help Back to Top
Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Liu C,Jun JH,Dixon RA MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula. Plant Physiol., 2014. 165(4): p. 1424-1439 [PMID:24948832] Zhu Z, et al. Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation. J. Exp. Bot., 2015. 66(13): p. 3775-89 [PMID:25911741] Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao. BMC Plant Biol., 2015. 15: p. 160 [PMID:26109181] Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors. Plant Physiol. Biochem., 2016. 102: p. 70-9 [PMID:26913794] Li Y, et al. Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis. Sci Rep, 2016. 6: p. 30514 [PMID:27465838] Li C,Zhang B,Chen B,Ji L,Yu H Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds. Nat Commun, 2018. 9(1): p. 571 [PMID:29422671]