PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025747.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARR-B
Protein Properties Length: 559aa    MW: 63015.5 Da    PI: 5.3029
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025747.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78e-26166219155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Aco025747.1 166 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 219
                  68*******************.9*******************************8 PP
2Response_reg55.82.5e-1979323109
                   CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el +
   Aco025747.1   7 Y-EVTTCGLARVALEILRERKdkFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELKN 93 
                   6.8899999999*****887778**********************6644.8**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001568.63E-22198No hitNo description
SuperFamilySSF521721.25E-241108IPR011006CheY-like superfamily
PROSITE profilePS5011034.103199IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363927.0E-1391548IPR017053Response regulator B-type, plant
SMARTSM004484.0E-10195IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.4E-321106No hitNo description
PfamPF000722.8E-16793IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.161163222IPR017930Myb domain
SuperFamilySSF466893.14E-18163223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28165224IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-23166219IPR006447Myb domain, plants
PfamPF002498.6E-8168218IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MLGTLPYEVT TCGLARVALE ILRERKDKFD IVISDVNMPD MDGFKLLEHV GLEMDLPVIM  60
MSIDGETSRV MKGVQHGACD YLLKPVRMKE LKNIWQHVYR KKMHEVREIE GHDIAEELQI  120
IRNGYENYEE RNIFNVGESN PLRKRKDVDN KEQSDQEIND PATVKKARVV WSVDLHQKFV  180
NAVNQIGFDK VGPKKILDLM NVPGLTRENV ASHLQKYRLY LSRLQKQNEG RSVGGSVNVQ  240
SESNPKCPEG NSELRGPSQL HHNNPARVYE GTSPKNQPQG TIPDTHFKDF SSVIPLEVFD  300
EKKALRNDVP DSRKTNNTSQ MESVLSFKKV PPNVGSKSSV PAMPKFQPWN EGVPVVQFMQ  360
YPKHDRERCS LLEDYSCLPK PNQEKPLSFN HFPTPPPVIS ITCNVEKGLS EVKPLIADYI  420
KTFSPMTCTV DSVSLQVTHG VINSQNIDAS TFNVDESPKV KDGYLDQALN PNFLPPSQDL  480
SLISAKDLVS LPDNVPLCSL EGIGCFENVG LNSMEIFQCD DLTTLTGVQS NWYDGYELNS  540
EHLYESVDYP FMDECLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17165224463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092783.10.0two-component response regulator ORR26
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A199VUS20.0A0A199VUS2_ANACO; Two-component response regulator
STRINGXP_008797265.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-102response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]