PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025748.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 303aa    MW: 32832.3 Da    PI: 4.3604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025748.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.3e-14215301896
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   +v+++++l lpk+  ++ g+ k++ k ++l+d+  r W v +    + + + + +GW +F  an+L+ gD +vF+l+g se+ l v++
  Aco025748.1 215 ISVTAQSWLELPKRLPSSLGKMKTGRKVVVLRDPCMRLWPVLY--HESARFVGFIGGWDDFTAANHLQHGDDCVFELSGASETVLQVRI 301
                  68899999********9999999999*****************..9999999999***********************99999777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.646208303IPR003340B3 DNA binding domain
SMARTSM010193.2E-5211303IPR003340B3 DNA binding domain
PfamPF023621.1E-11214301IPR003340B3 DNA binding domain
CDDcd100178.43E-16216303No hitNo description
SuperFamilySSF1019365.89E-16217301IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-14220301IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
GEQSNERINS PDPEVACGEL DVENSTENVS GAPQISDAVS DQKDEGDLVC SHDVASEVVM  60
QDMTCLGQDQ ESNGKIGESG NAPTSTTNGK DEIVCFSRKV TRKRRNKDSL HKNGGDLPFN  120
ASTLDGADTE KETPKSSCED TLYGSKTEEN HGPGSPPMLL CNKEEDQSLG AKIIADDVMI  180
DNSHQSEIPL QAVKIESEDP IDAEPLNNGN FGVSISVTAQ SWLELPKRLP SSLGKMKTGR  240
KVVVLRDPCM RLWPVLYHES ARFVGFIGGW DDFTAANHLQ HGDDCVFELS GASETVLQVR  300
ISK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6679361e-156KM667936.1 Ananas bracteatus clone 54346 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087573.10.0B3 domain-containing protein Os02g0598200-like isoform X4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240