PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025749.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 170aa    MW: 19698.4 Da    PI: 9.7382
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025749.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.5e-11411023398
                  -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ + l+d+ g +W+vk   +   g+  ++ GW++F+ ++ +k g+ +vFk +++++f   v++f 
  Aco025749.1  41 DQNVYLQDSYGYRWRVKT--CSMNGALAFGHGWRNFALDHAIKFGELLVFKQISKHGF--SVQIFA 102
                  4579**************..8888899************************8777777..888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.7161104IPR003340B3 DNA binding domain
CDDcd100171.10E-101101No hitNo description
SMARTSM010190.001419104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-1333103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1433102IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-841102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
YVPPMFAKAI GDLADQNVYL QDSYGYRWRV KTCSMNGDLA DQNVYLQDSY GYRWRVKTCS  60
MNGALAFGHG WRNFALDHAI KFGELLVFKQ ISKHGFSVQI FATTARERLH LCERNKRSNK  120
RKRRRKKEPA NNLCLNDIQN NSDASEKRLC ILDKDSPKDE KIIDATNVMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124KRKRRR
2120124RKRRR
3120126RKRRRKK
4120127RKRRRKKE
5122127RRRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087549.11e-80B3 domain-containing protein Os01g0905400-like isoform X1
RefseqXP_020087558.11e-80B3 domain-containing protein Os01g0905400-like isoform X2
RefseqXP_020087565.12e-80B3 domain-containing protein Os01g0905400-like isoform X3
RefseqXP_020087581.17e-81uncharacterized protein LOC109709646 isoform X5
SwissprotQ5N6V05e-31Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]